CX300195

Overview
NameCX300195
Unique NameCX300195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++ FIGNSTSIQE+F+RV EQF AMFRRKAFLHWYTGEGMDEMEFTEAESNM DLV
Sbjct:  363 MSAAFIGNSTSIQELFKRVGEQFQAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            ++STF+GNST+IQE+FRRV EQF+AMFRR+AFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  365 ISSTFVGNSTAIQEIFRRVGEQFSAMFRRQAFLHWYTSEGMDEMEFTEAESNMNDLV 421          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 3
Query:    6 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            +STFIGNST+IQ++FRRV +QF+ MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  365 SSTFIGNSTAIQDIFRRVGDQFSVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 420          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+ TFIGNST+IQ++F+R+++QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM DLV
Sbjct:  363 MSVTFIGNSTAIQDLFKRIADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB8B_HUMAN (Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGN+ +IQE+F  VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.193e-22
Identity = 47/53 (88.68%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 161
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct:  289 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 341          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.864e-22
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TF+GNST+IQE+F+RVS+QFTAMF+RKAFLHWYT EGMDEMEFTEAESNM DLV
Sbjct:  363 MAVTFLGNSTAIQELFKRVSDQFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.864e-22
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGN+T IQE+F+R+  QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNNTCIQELFKRIGLQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.864e-22
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            ++STFIGNST+IQ  FRRV +QF+ MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  361 VSSTFIGNSTAIQNSFRRVGDQFSLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 417          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.740e-22
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+++FIGN+ +IQE+F  VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  291 MSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 347          
The following BLAST results are available for this feature:
BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBBN_GUITH9.843e-2385.96Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]
TBB1_TRIVI9.843e-2384.21Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB1_COLGL9.843e-2385.71Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]
TBB_MELLI1.285e-2282.46Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB8B_HUMAN1.285e-2285.96Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1[more]
TBB_HALDI2.193e-2288.68Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBB_COPC72.864e-2284.21Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB2_PHYPO2.864e-2282.46Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBB1_COLGR2.864e-2284.21Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
YI016_HUMAN3.740e-2284.21Putative tubulin beta chain-like protein ENSP00000... [more]

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Properties
Property NameValue
Genbank descriptionC07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC
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