CX300205

Overview
NameCX300205
Unique NameCX300205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15404 contig Ccv1_Contig15404:292..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 2
Query:   62 VVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 289
            +V+D    WCGPC+ IAP   ELAKK  +V FLK+D + E K++A E  +  +PTF  LK+ K++ +V GAK ++L
Sbjct:   31 IVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVD-ELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDEL 105          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 34/87 (39.08%), Postives = 59/87 (67.82%), Query Frame = 2
Query:   38 VKAAGD--KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLV 292
            +KAA +  K +V+D    WC PC+ IAP F +LAKK+ DV+F K+D ++ N ++A+E  ++ +PTF  +K+ ++ + V GA  E+++
Sbjct:   20 LKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELN-TVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEII 105          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   47 AGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 289
            A  K VV+D    WCGPC+++AP F +LAKK+   +FLK+D + E K +A++  +  +PTF  +K+  V   V GA  E+L
Sbjct:   38 AAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVD-ELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 117          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   35 IVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSD-VIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA---KLEDLVFA 298
            + KA+G K VVLD +  WCGPCK+I+PK  EL+ +Y+D V+ LK+D + E + +A E  I  +PTF  LK+   V+E  GA   +LED++ A
Sbjct:   15 LTKASG-KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVD-ECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKA 104          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   56 KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAI 301
            K +V+D    WCGPC+VI P   ELAKK+  V F K+D + + K +A+E  +  +P+F ILK+ + V+ + GA+ ++L+  I
Sbjct:   28 KLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVD-DLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKI 108          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 2
Query:    2 VTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 274
            VT++   + +    A+GDK VV+D +  WCGPCK+IAP  ++ A++YSD  F KLD + E   +A++  +  +PT    K  K V  V GA
Sbjct:    2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVD-EVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGA 91          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   62 VVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAV 310
            VV+D +  WCGPCK IAP  ++ A+ Y+D  F ++D + E   +A ELGIR +PTF + KD + V +V GA    L   I A+
Sbjct:   27 VVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVD-ELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKAL 108          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   14 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 289
            +K+ F  ++K AG+K V +D    WCGPC+ + P F  L+ K+ DVIFL++D  ++ + L ++  +  +PTF+  K+ + V E +GA +E L
Sbjct:  452 DKEEFEEVLKDAGEKLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVD-TEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKL 542          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   11 VNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 289
            ++K+ F   +K AG++ V +D    WCGPC+ I P F  L+ K+ DV+FL++D +   + + +E  I  VPTF+  K  + V E+ GA  E L
Sbjct:  454 LSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDAD-NCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKL 545          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 29/78 (37.18%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   56 KTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 289
            K +V+D    WC PC+ IAP F E+AKK+++V+F K+D + E +++A+E  +  +PTF  +K+  ++  V GA  +++
Sbjct:   28 KLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVD-ELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEI 104          
The following BLAST results are available for this feature:
BLAST of CX300205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
TRXH_RICCO2.720e-1346.05Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH3_ARATH2.720e-1339.08Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT3.553e-1341.98Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
THIO2_DROYA3.553e-1345.65Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TRXH_FAGES6.060e-1340.24Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRX2_YEAST6.060e-1339.56Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_EMENI6.060e-1343.37Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TXND2_RAT1.034e-1236.96Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TXND2_HUMAN1.350e-1237.63Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRXH5_ARATH1.350e-1237.18Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionC07007D09SK SaltLeaf1 Citrus clementina cDNA clone C07007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300205 ID=CX300205; Name=CX300205; organism=Citrus clementina; type=EST; length=423bp
GGTCACTGAAGTAAATAAGGATACTTTTTGGCCCATCGTTAAGGCCGCCG
GTGATAAGACTGTTGTTCTTGATATGTACACTCAATGGTGTGGTCCTTGT
AAAGTGATAGCTCCAAAATTTCAAGAATTAGCCAAAAAGTACTCCGATGT
TATATTTCTAAAGCTTGATTGCAACCAAGAGAACAAGTCATTGGCGAAAG
AGCTTGGAATAAGGGTTGTTCCTACTTTCAAGATTCTGAAAGACAATAAG
GTTGTAAAGGAAGTGACGGGGGCCAAATTGGAAGACCTAGTTTTCGCCAT
TGATGCTGTTAGATCCGGTTGAAAATTCTTTCCTATTATTTCTCCTGTAA
ACTATAAGCAATATGATCAGCAATGTGTACGTGCTTGAGAATAATTGATT
GTTCCACTTGTATGTATTTATGT
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