CX300205

Overview
NameCX300205
Unique NameCX300205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15404 contig Ccv1_Contig15404:292..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   62 VVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 274
            V++D +  WCGPC+++AP   E+A++YSD + +      EN S+A + GIR +PT  I KD + V  V GA
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGA 93          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 2
Query:   53 DKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 274
            +K V++D +  WCGPC++I+P   ELA++Y + + +      EN S++ E GIR +PT  + KD K V  V GA
Sbjct:   20 EKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGA 93          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 29/70 (41.43%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   20 DTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTF 229
            + F   +K AGD+ V++D Y  WCG C+ + PK  + AK++ +++FLK++ + ENKSL K L ++V+P F
Sbjct:  102 EQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFD-ENKSLCKSLNVKVLPYF 170          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.672e-11
Identity = 28/74 (37.84%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   53 DKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 274
            ++ V++D + +WCGPCK IAP ++E +K Y+ ++F+K+D ++ ++   KE  I  +PTFK+ K+   V  + GA
Sbjct:   18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKE-NITSMPTFKVYKNGSSVDTLLGA 90          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 2
Query:    2 VTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 274
            V +V+ D     +K  GDK +V D +  WCGPCK +APK   +AK+   VIF+KLD + E + +A++  +  +PT  + K+   +  V GA
Sbjct:    7 VKQVDGDALEAAIK--GDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVD-ECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGA 94          
BLAST of CX300205 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   53 DKTVVLDMYTQWCGPCKVIAPKFQELAKKY-SDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLV 292
            DK V++D +  WCGPC ++ P  ++LA  Y    I  KL+ + EN ++A + GIR +PT  I+K  KVV ++ GA  ++++
Sbjct:   20 DKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVD-ENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMI 99          
The following BLAST results are available for this feature:
BLAST of CX300205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
THIO1_SYNE71.949e-1142.25Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_CYACA2.546e-1140.54Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
TRXL2_ARATH5.672e-1141.43Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
THIO_PLAF75.672e-1137.84Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_ECHGR7.408e-1137.36Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_CHLLT9.675e-1138.27Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]

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Properties
Property NameValue
Genbank descriptionC07007D09SK SaltLeaf1 Citrus clementina cDNA clone C07007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300205 ID=CX300205; Name=CX300205; organism=Citrus clementina; type=EST; length=423bp
GGTCACTGAAGTAAATAAGGATACTTTTTGGCCCATCGTTAAGGCCGCCG
GTGATAAGACTGTTGTTCTTGATATGTACACTCAATGGTGTGGTCCTTGT
AAAGTGATAGCTCCAAAATTTCAAGAATTAGCCAAAAAGTACTCCGATGT
TATATTTCTAAAGCTTGATTGCAACCAAGAGAACAAGTCATTGGCGAAAG
AGCTTGGAATAAGGGTTGTTCCTACTTTCAAGATTCTGAAAGACAATAAG
GTTGTAAAGGAAGTGACGGGGGCCAAATTGGAAGACCTAGTTTTCGCCAT
TGATGCTGTTAGATCCGGTTGAAAATTCTTTCCTATTATTTCTCCTGTAA
ACTATAAGCAATATGATCAGCAATGTGTACGTGCTTGAGAATAATTGATT
GTTCCACTTGTATGTATTTATGT
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