CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9464 contig Ccv1_Contig9464:570..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadJ PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 208
            ALAC  RIC   +  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+ +GLV+  VP
Sbjct:  127 ALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVP 197          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 208
            ALAC  RIC   +  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+ +GLV+  VP
Sbjct:  127 ALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVP 197          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 208
            ALAC  RIC   +  +LGLPE  L ++PG+GGTQRLPRLVG S A D+I TG+++  + A+ +GLV+  VP
Sbjct:  127 ALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVP 197          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQ----AQLKALEIAQ 247
            A+AC  RI    A LGLPE  L IIPG GGTQRLPRLVG S A +++ T + + G++A SLGLV+  VP  +    A+  ALEI +
Sbjct:  121 AMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILE 206          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 ALACDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIA 244
            ALAC  R+C +++  +LG+PE  L ++PG GGTQRLPRL+G + A D++ TG++V  K A+ +GLV+  VP       A+E+A
Sbjct:  118 ALACHQRVCSDSSKTMLGVPEVQLGLLPGGGGTQRLPRLIGIAKALDLMLTGKQVRPKQAVKMGLVDDVVPESILLDTAIEMA 200          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SHIBS (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 4 (strain Sb227) GN=fadJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQE 250
            ALAC  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S   ++I TG+++  K A+ LGLV+  VP       A+E+A++
Sbjct:  120 ALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 ALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIA 244
            ALAC  R+C ++   +LGLPE  L ++PG GGTQRLPRLVG + + D++ TG+++  K A+ +GLV+  VP       A+E+A
Sbjct:  118 ALACHQRVCTDSNKTMLGLPEVQLGLLPGGGGTQRLPRLVGIAKSLDMMLTGKQLRAKQALKMGLVDDVVPESILLQTAIEMA 200          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_SERP5 (Fatty acid oxidation complex subunit alpha OS=Serratia proteamaculans (strain 568) GN=fadJ PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALE 238
            ALAC  R+C   +   LGLPE  L ++PG+GGTQRLPRL+G S A D+I TG+ +  + A+ LGLV+  VP       A+E
Sbjct:  124 ALACHGRVCSLDDKTALGLPEVQLGLLPGSGGTQRLPRLIGASKALDMILTGKHIRARQALRLGLVDDAVPQSILLQTAIE 204          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_KLEP7 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 ALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIA 244
            ALAC  RIC   E   LGLPE  L ++PG+GGTQRLPRL+G S A D++ TG+++  + A+  GLV+  VP       A+E+A
Sbjct:  120 ALACHGRICSDDEKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMMLTGKQLRPRQALKAGLVDEVVPQAILLQAAVELA 202          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADJ_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadJ PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 2
Query:    2 ALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 208
            ALACD R+C +     LGLPE  L ++PG+GGTQRLPRL+G   + DII TG+++  K A+ LG+V+  VP
Sbjct:  121 ALACDYRVCSDDNKTKLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDIILTGKQLRPKTALKLGVVDASVP 191          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADJ_YERPE5.135e-1453.52Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPA5.135e-1453.52Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERP35.135e-1453.52Fatty acid oxidation complex subunit alpha OS=Yers... [more]
MFPA_CUCSA6.707e-1451.16Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
FADJ_SHEAM6.707e-1445.78Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHIBS8.759e-1445.88Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHELP8.759e-1445.78Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SERP58.759e-1448.15Fatty acid oxidation complex subunit alpha OS=Serr... [more]
FADJ_KLEP78.759e-1448.19Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADJ_VIBF11.144e-1352.11Fatty acid oxidation complex subunit alpha OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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