CX300207

Overview
NameCX300207
Unique NameCX300207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 205
            LA D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA+ +GLV+  V
Sbjct:  122 LATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDALKIGLVDAVV 188          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECH1_RAT (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Rattus norvegicus GN=Ech1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 39/141 (27.66%), Postives = 73/141 (51.77%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLK-ALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPK 424
            ACD+R C + A   + E  + +    G  QRLP+++G +S+  ++ FT RK+   +A+  GLV+   P     L  A  +A +I+ K P+A++ +K  +    +  +  +L+      +  L T+D ++ + A  EK+  K
Sbjct:  180 ACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSK 320          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MENB_STAS1 (Naphthoate synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=menB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKY 427
            + CDL I  + A+ G     +       G+  L R+VG   A++I +  R+ + ++A+ +GLVN  VP  Q + + ++  QE+ Q  P A+R  K A+    +  +A   ++  +  +    T++  EG  AF EKR P +
Sbjct:  126 VVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLDQVEDETVQWCQEMKQHSPTALRFLKAAMNADTD-GLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDF 265          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHP_PONAB (Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAI 298
            AL C  RI    A +GLPE  L ++PGA GTQ LPRL+G   A D+I +GR +   +A+ LG+++  V +   + +A+  AQ ++ +   + R+  + I
Sbjct:  106 ALGCHYRIAHSEAQVGLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVE-EAIRFAQRVSDQPLESRRLCNKPI 203          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECHD3_RAT (Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 37/141 (26.24%), Postives = 71/141 (50.35%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKYT 430
            +CD+ +  + +    P   + +         L R V + VA +++FTG  +S ++A+  GL++  VP  Q + +A  IA++I       + + K    K L  D+++A  L  +  +  L  +D  EG+ AF +KR+P ++
Sbjct:  160 SCDIAVASDKSSFATPGVNVGLFCSTPAVA-LGRAVPRKVALEMLFTGEPISAQEALRHGLISKVVPEEQLEEEATRIAKKIASLSRSVVALGKATFYKQLPQDLSTAYFLASQAMVDNLTLKDGQEGIEAFIQKRRPVWS 299          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: ECH1_DICDI (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Dictyostelium discoideum GN=ech1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 40/139 (28.78%), Postives = 66/139 (47.48%), Query Frame = 2
Query:    8 ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQL-KALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKP 421
            ACD+R+C   A   + ET L+II   G  QR+ ++VG   A+++  TG+ +  K A    LVN+  P     L +  ++A  I Q  P+ ++  K  +    +  +   L          L ++D  E   +F EKR+P
Sbjct:  149 ACDIRLCSSDAKFSIRETKLSIIADLGTLQRISKIVGSGFARELALTGKDIDAKTAERFNLVNHVYPDHDTLLSEGRKLALSIAQNSPLVVQATKLTLNHADDHTIDEGLYRVALQNAAFLKSDDLNESATSFFEKRQP 287          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: YHAR_BACSU (Putative enoyl-CoA hydratase/isomerase yhaR OS=Bacillus subtilis GN=yhaR PE=3 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 41/143 (28.67%), Postives = 76/143 (53.15%), Query Frame = 2
Query:    2 ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEV-DMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKY 427
            AL  D+ +  + A+L +   G+ ++P  GG   L + +G++ AK +I++G+K+S  +A  +GL++    AG     A  I + +    P+   +  + I + L++ ++   L LE         T+D  EG+ AF EKR+PK+
Sbjct:  113 ALCADIVLAEKNAVLAMNFIGIGLVPDGGGHYLLKKRIGEAKAKKLIWSGKKLSASEAADMGLLDGTF-AGDPAEGARPIIETL-LASPLLAMIETKGIFQSLQIEELKKVLSLERSAQERMRRTKDHQEGIRAFLEKREPKF 253          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: MENB_BACSU (Naphthoate synthase OS=Bacillus subtilis GN=menB PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 39/141 (27.66%), Postives = 71/141 (50.35%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQEINQKGPIAIRMAKRAITKGLEVDMASALELEEECYIGTLHTEDRLEGLAAFAEKRKPKY 427
            + CDL I  + A+ G     +       G+  L R+VG   A++I +  R+ + ++A+ +GLVN  VP  Q + + ++  +E+ +K P A+R  K A     +  +A   +   +  +    T++  EG  +F EKRKP +
Sbjct:  125 IVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEQLEEETIKWCEEMLEKSPTALRFLKAAFNADTD-GLAGIQQFAGDATLLYYTTDEAKEGRDSFKEKRKPDF 264          
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match: FADB_YERE8 (Fatty acid oxidation complex subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2
Query:    5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQE 250
            LA D R+    A +GLPET L I+PG GG+ RLPRL+G   A +II  G+ +  KDA+ +GLV+  V   +    AL I  +
Sbjct:  122 LATDFRVASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDIIAKDALKVGLVDAVVAPEKLVDAALSILNQ 203          
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADB_YERPA1.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERP31.398e-1152.24Fatty acid oxidation complex subunit alpha OS=Yers... [more]
ECH1_RAT1.398e-1127.66Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
MENB_STAS11.826e-1128.37Naphthoate synthase OS=Staphylococcus saprophyticu... [more]
ECHP_PONAB3.115e-1136.36Peroxisomal bifunctional enzyme OS=Pongo abelii GN... [more]
ECHD3_RAT3.115e-1126.24Enoyl-CoA hydratase domain-containing protein 3, m... [more]
ECH1_DICDI3.115e-1128.78Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
YHAR_BACSU4.069e-1128.67Putative enoyl-CoA hydratase/isomerase yhaR OS=Bac... [more]
MENB_BACSU4.069e-1127.66Naphthoate synthase OS=Bacillus subtilis GN=menB P... [more]
FADB_YERE84.069e-1143.90Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionC07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp
GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT
TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG
CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG
CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT
GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT
GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA
TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA
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