Overview
Name CX300207
Unique Name CX300207
Type EST
Organism Citrus clementina (Clementine)
Sequence length 448
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match:
FADB_PHOPR (Fatty acid oxidation complex subunit alpha OS=Photobacterium profundum GN=fadB PE=3 SV=1)
HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2
Query: 5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQE 250
LA D R+ A +GLPET L I+PG GGT RLPRL+G A +II G+ +DA+ LGLV+ V + AL + ++
Sbjct: 122 LATDFRLADITARIGLPETRLGIMPGFGGTVRLPRLLGADSAMEIITAGKDKKAQDALKLGLVDAVVAPTALKDAALSMIKD 203
BLAST of CX300207 vs. ExPASy Swiss-Prot
Match:
FADB_IDILO (Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis GN=fadB PE=3 SV=1)
HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 2
Query: 5 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEIAQ 247
LACD R+ A +GLPE L +IPG GGT RLPR++G A + I TG+ DA+ +G V+ V AL +A+
Sbjct: 121 LACDYRVADTTATIGLPEVKLGLIPGFGGTMRLPRVIGPDNALEWITTGKNNKALDALKVGAVDAVVEPENLTKAALNLAK 201
The following BLAST results are available for this feature:
BLAST of CX300207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 172
50 100 150 200 250 300 350 400 Expect = 9.06e-11 / Id = 43.90 Expect = 9.06e-11 / Id = 41.98 Sequence FADB_PHOPR FADB_IDILO
Match Name E-value Identity Description
FADB_PHOPR 9.064e-11 43.90 Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADB_IDILO 9.064e-11 41.98 Fatty acid oxidation complex subunit alpha OS=Idio... [more]
Pages back to top
Properties
Property Name Value
Genbank description C07007D11SK SaltLeaf1 Citrus clementina cDNA clone C07007D11, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>CX300207 ID=CX300207; Name=CX300207; organism=Citrus clementina; type=EST; length=448bp GGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCT TGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGG CTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACTGG CCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTACT GTGTTCCTGCTGGTCAAGCTCAGCTGAAGGCACTTGAAATTGCTCAGGAA ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC TAAGGGATTGGAGGTGGATATGGCATCAGCATTGGAACTGGAAGAAGAGT GCTACATTGGGACCTTGCATACAGAGGATCGGTTGGAGGGCTTGGCTGCA TTTGCCGAGAAGCGGAAACCCAAGTACACCGGCACATAGAGAGAAAGA back to top