CX300217

Overview
NameCX300217
Unique NameCX300217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDG--KWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKVNIND 418
            P+  +GL  H+D G  T ++Q+   GL +   G  +W+ V   PG+ VVN+GD  +IL+NG++ SV HRAVVN  + RIS+    GPP    V P ++ L     P  YR + + EY+ +++     G S L  V ++ ++
Sbjct:  220 PKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREAL--AGTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAISTDN 358          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDG--KWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKVNIND 418
            P+  +GL  H+D G  T ++Q+   GL +   G  +W+ V   PG+ VVN+GD  +IL+NG++ SV HRAVVN  + RIS+    GPP    V P ++ L     P  YR + + EY+ +++     G S L  V ++ ++
Sbjct:  220 PKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREAL--AGTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAISTDN 358          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQ 352
            PE+ +G+  H+D   LT ++ N   GL + ++GKW+     P S V++IGD +EILSNGKYKS+LHR +VN +  RIS A    PP + ++        +E+ P ++    + E++Q
Sbjct:  227 PELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQ 343          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.282e-18
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDG--KWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGP 280
            P++ +GL  H+D G +T+L+Q+   GL    DG   WI V P  G+FVVN+GDH   +SNG++K+  H+AVVNG+++R+S+AT   P  D  V P
Sbjct:  211 PDLTLGLKRHTDPGTITLLLQDLVGGLQATRDGGKNWITVQPISGAFVVNLGDHGHFMSNGRFKNADHQAVVNGESSRLSIATFQNPAPDARVWP 305          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.282e-18
Identity = 49/133 (36.84%), Postives = 82/133 (61.65%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHV-GLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAV--VNGKATRISVATAHGPPLDTVVGPAQDLLDNE---NRPPLYRGIKYREYLQLQQSNQLKGK 382
            P++V GL  H+D G + +L Q+D V GL +  DG+W+ V P   S VVN+GD +E+++NGKYKSV HR +   +G+  R+S+A+ + P  D+V+ PA +L+  E    +   Y    + +Y++L  + + + K
Sbjct:  168 PDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEG-RMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAK 299          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.204e-18
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDG--KWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGP 280
            P++ +GL  H+D G +T+L+Q+   GL    DG   WI V P  G+FVVN+GDH   LSNG++K+  H+AVVN   +R+S+AT   P  + +V P
Sbjct:  206 PDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGESWITVKPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSSTSRLSIATFQNPAPEAIVYP 300          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.204e-18
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    5 EVVMGLPPHSDHGLLTILMQNDHVG-LHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPP-LYRGIKYREYLQLQQSNQLKGK 382
            ++V GL  H+D G + +L Q+D VG L +  DG+WI V P   + V+N GD +E+LSNG+YKS  HR +      R S+A+ + P L   + PA      E  PP LY    + +Y+ +    + + K
Sbjct:  169 DLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKFLFGDYMDVYAKQKYEPK 296          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17
Identity = 50/125 (40.00%), Postives = 64/125 (51.20%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLK 376
            P  V GL PH+D   LTIL Q+   GL +  D +WI V P P + ++NIGD  +  SNG YKSV HR + N K  R S A    P  D V+  + D        P YR   +RE+ Q  Q +  K
Sbjct:  206 PSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVIECSSD-------RPAYRNFSFREFRQQVQEDVKK 323          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQ---LQQSNQLKGKS 385
            PE+ +G+  H+D   L+ ++ N   GL V H  +W+     PG+ +V++GD +EILSNG+Y SVLHR +VN +A RIS      PP D+V+      L  E  P  +    ++++L     ++  Q K K+
Sbjct:  245 PELAVGVEAHTDVSALSFILHNGVPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARFTPRTFKQHLDRKLFKKKQQHKAKA 375          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 42/115 (36.52%), Postives = 70/115 (60.87%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREY 346
            P++ +G+P H+D   +T+L+ N+  GL V  D  W      P + +V+IGD +  LSNG+YK+VLHR  V+ + TR+S      PP + +VGP  +L  ++N PP ++   +++Y
Sbjct:  212 PDLALGVPAHTDLSGITLLVPNEVPGLQVFKDDHWFDAEYIPSAVIVHIGDQILRLSNGRYKNVLHRTTVDKEKTRMSWPVFLEPPREKIVGPLPELTGDDN-PPKFKPFAFKDY 325          
The following BLAST results are available for this feature:
BLAST of CX300217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
G3O22_WHEAT2.820e-1835.46Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT2.820e-1835.46Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
LDOX_MALDO4.810e-1837.61Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
FL3H_HORVU6.282e-1845.26Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
ACCO1_ARATH6.282e-1836.841-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
FL3H_CALCH8.204e-1844.21Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]
ACCO_MUSAC8.204e-1835.941-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
G2OX8_ARATH1.072e-1740.00Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
LDOX_MAIZE1.828e-1735.11Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
FLS1_ARATH1.828e-1736.52Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC07007E11SK SaltLeaf1 Citrus clementina cDNA clone C07007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300217 ID=CX300217; Name=CX300217; organism=Citrus clementina; type=EST; length=420bp
GCCAGAAGTAGTGATGGGGCTGCCTCCTCATTCGGATCATGGCCTCTTAA
CCATCCTTATGCAGAATGACCATGTAGGTCTTCACGTACGGCACGATGGC
AAATGGATTCCCGTCAATCCTCCACCCGGCTCTTTCGTAGTCAACATAGG
AGACCACATGGAGATACTAAGTAACGGAAAGTACAAAAGCGTGTTGCACA
GAGCAGTAGTGAACGGCAAAGCAACAAGAATCTCCGTTGCAACGGCACAC
GGGCCTCCTCTTGACACGGTCGTGGGCCCTGCTCAGGATTTGCTTGACAA
TGAGAACCGACCCCCGTTGTATCGTGGGATCAAATATAGAGAGTATTTGC
AGCTTCAACAGAGCAATCAACTGAAAGGGAAATCCTGCTTGGACCACGTC
AAAGTCAATATCAATGATAC
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