CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CHLSC (50S ribosomal protein L14, chloroplastic OS=Chloranthus spicatus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNP+GTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPRGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CALFG (50S ribosomal protein L14, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.932e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRKLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_TOBAC (50S ribosomal protein L14, chloroplastic OS=Nicotiana tabacum GN=rpl14 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SOLTU (50S ribosomal protein L14, chloroplastic OS=Solanum tuberosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SOLLC (50S ribosomal protein L14, chloroplastic OS=Solanum lycopersicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SOLBU (50S ribosomal protein L14, chloroplastic OS=Solanum bulbocastanum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PLAOC (50S ribosomal protein L14, chloroplastic OS=Platanus occidentalis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQL+FTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLSFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_NICSY (50S ribosomal protein L14, chloroplastic OS=Nicotiana sylvestris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_LACSA (50S ribosomal protein L14, chloroplastic OS=Lactuca sativa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQ NFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQFNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_HELAN (50S ribosomal protein L14, chloroplastic OS=Helianthus annuus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQ NFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQFNFTKIVSLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_CHLSC6.073e-3195.7150S ribosomal protein L14, chloroplastic OS=Chlora... [more]
RK14_CALFG7.932e-3195.7150S ribosomal protein L14, chloroplastic OS=Calyca... [more]
RK14_TOBAC1.036e-3092.8650S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_SOLTU1.036e-3092.8650S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_SOLLC1.036e-3092.8650S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_SOLBU1.036e-3092.8650S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_PLAOC1.036e-3095.7150S ribosomal protein L14, chloroplastic OS=Platan... [more]
RK14_NICSY1.036e-3092.8650S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_LACSA1.036e-3094.2950S ribosomal protein L14, chloroplastic OS=Lactuc... [more]
RK14_HELAN1.036e-3094.2950S ribosomal protein L14, chloroplastic OS=Helian... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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