CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_GUIAB (50S ribosomal protein L14, chloroplastic OS=Guizotia abyssinica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQ NFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQFNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_VITVI (50S ribosomal protein L14, chloroplastic OS=Vitis vinifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKGTR+FGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIVRELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PANGI (50S ribosomal protein L14, chloroplastic OS=Panax ginseng GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = -3
Query:  347 RSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 553
            RSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   54 RSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKI+SLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CERDE (50S ribosomal protein L14, chloroplastic OS=Ceratophyllum demersum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNF KIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFAKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ATRBE (50S ribosomal protein L14, chloroplastic OS=Atropa belladonna GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSE++RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEIVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ACOCL (50S ribosomal protein L14, chloroplastic OS=Acorus calamus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELR LNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRHLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_IPOPU (50S ribosomal protein L14, chloroplastic OS=Ipomoea purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQ NFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDKEGNPKGTRIFGAIARELRQFNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_DAUCA (50S ribosomal protein L14, chloroplastic OS=Daucus carota GN=rpl14 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = -3
Query:  347 RSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 553
            RSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   54 RSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_NICTO (50S ribosomal protein L14, chloroplastic OS=Nicotiana tomentosiformis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+RDNG+IIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKRDNGIIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_GUIAB1.036e-3094.2950S ribosomal protein L14, chloroplastic OS=Guizot... [more]
RK14_VITVI1.353e-3092.8650S ribosomal protein L14, chloroplastic OS=Vitis ... [more]
RK14_PANGI1.353e-3095.6550S ribosomal protein L14, chloroplastic OS=Panax ... [more]
RK14_CUCSA1.353e-3092.8650S ribosomal protein L14, chloroplastic OS=Cucumi... [more]
RK14_CERDE1.353e-3094.2950S ribosomal protein L14, chloroplastic OS=Cerato... [more]
RK14_ATRBE1.353e-3091.4350S ribosomal protein L14, chloroplastic OS=Atropa... [more]
RK14_ACOCL1.353e-3094.2950S ribosomal protein L14, chloroplastic OS=Acorus... [more]
RK14_IPOPU1.767e-3092.8650S ribosomal protein L14, chloroplastic OS=Ipomoe... [more]
RK14_DAUCA1.767e-3094.2050S ribosomal protein L14, chloroplastic OS=Daucus... [more]
RK14_NICTO3.014e-3091.4350S ribosomal protein L14, chloroplastic OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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