CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_MORIN (50S ribosomal protein L14, chloroplastic OS=Morus indica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID E NPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQERNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_BUXMI (50S ribosomal protein L14, chloroplastic OS=Buxus microphylla GN=rpl14 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL R NGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELNRGNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_POPTR (50S ribosomal protein L14, chloroplastic OS=Populus trichocarpa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.141e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_POPAL (50S ribosomal protein L14, chloroplastic OS=Populus alba GN=rpl14 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.141e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.141e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NGMIIRYDDNAAVVID EGNPKGTR+FGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_GOSHI (50S ribosomal protein L14, chloroplastic OS=Gossypium hirsutum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_GOSBA (50S ribosomal protein L14, chloroplastic OS=Gossypium barbadense GN=rpl14 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_OLIPU (50S ribosomal protein L14, chloroplastic OS=Olimarabidopsis pumila GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_NASOF (50S ribosomal protein L14, chloroplastic OS=Nasturtium officinale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_LOBMA (50S ribosomal protein L14, chloroplastic OS=Lobularia maritima GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_MORIN3.014e-3094.2950S ribosomal protein L14, chloroplastic OS=Morus ... [more]
RK14_BUXMI3.014e-3095.7150S ribosomal protein L14, chloroplastic OS=Buxus ... [more]
RK14_POPTR5.141e-3094.2950S ribosomal protein L14, chloroplastic OS=Populu... [more]
RK14_POPAL5.141e-3094.2950S ribosomal protein L14, chloroplastic OS=Populu... [more]
RK14_CARPA5.141e-3092.8650S ribosomal protein L14, chloroplastic OS=Carica... [more]
RK14_GOSHI8.770e-3094.2950S ribosomal protein L14, chloroplastic OS=Gossyp... [more]
RK14_GOSBA8.770e-3094.2950S ribosomal protein L14, chloroplastic OS=Gossyp... [more]
RK14_OLIPU1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Olimar... [more]
RK14_NASOF1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Nastur... [more]
RK14_LOBMA1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Lobula... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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