CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_LEPVR (50S ribosomal protein L14, chloroplastic OS=Lepidium virginicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_DRANE (50S ribosomal protein L14, chloroplastic OS=Draba nemorosa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CRUWA (50S ribosomal protein L14, chloroplastic OS=Crucihimalaya wallichii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CAPBU (50S ribosomal protein L14, chloroplastic OS=Capsella bursa-pastoris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_BARVE (50S ribosomal protein L14, chloroplastic OS=Barbarea verna GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ARATH (50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ARAHI (50S ribosomal protein L14, chloroplastic OS=Arabis hirsuta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_AETGR (50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_AETCO (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium GN=rpl14 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG IIRYDDNAAVVID EGNPKGTRVFGAI RELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_DIOEL (50S ribosomal protein L14, chloroplastic OS=Dioscorea elephantipes GN=rpl14 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.333e-29
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R+NG+IIRYDDNAAVVID EGNPKGTRVFGAI RELRQ NFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRNNGIIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQFNFTKIVSLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_LEPVR1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Lepidi... [more]
RK14_DRANE1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Draba ... [more]
RK14_CRUWA1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Crucih... [more]
RK14_CAPBU1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Capsel... [more]
RK14_BARVE1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Barbar... [more]
RK14_ARATH1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Arabid... [more]
RK14_ARAHI1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Arabis... [more]
RK14_AETGR1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Aethio... [more]
RK14_AETCO1.954e-2992.8650S ribosomal protein L14, chloroplastic OS=Aethio... [more]
RK14_DIOEL3.333e-2991.4350S ribosomal protein L14, chloroplastic OS=Diosco... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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