CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.424e-29
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KEL+R+NGMIIRYDDNAAV+ID +GNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_NANDO (50S ribosomal protein L14, chloroplastic OS=Nandina domestica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            +RSEVIRAVIVRT KEL+RDNGMII+YDDNAAVVID EGNP+GTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   53 QRSEVIRAVIVRTRKELKRDNGMIIQYDDNAAVVIDQEGNPRGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CUSRE (50S ribosomal protein L14, plastid OS=Cuscuta reflexa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.266e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAI RELRQ NFTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQFNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SOYBN (50S ribosomal protein L14, chloroplastic OS=Glycine max GN=rpl14 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.654e-28
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R NG+II+YDDNAAVVID EGNPKGTR+F AIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CICAR (50S ribosomal protein L14, chloroplastic OS=Cicer arietinum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.654e-28
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R NG+II+YDDNAAVVID EGNPKGTR+F AIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVVIDKEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_AMBTC (50S ribosomal protein L14, chloroplastic OS=Amborella trichopoda GN=rpl14 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.160e-28
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = -3
Query:  350 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEV 556
            ERSEVIRAVIVRTCKEL+RDNG+IIRYDDNAAVVID EGNPKGTRVFG+IA ELR LNFTKIVSLAPEV
Sbjct:   53 ERSEVIRAVIVRTCKELKRDNGIIIRYDDNAAVVIDPEGNPKGTRVFGSIAGELRHLNFTKIVSLAPEV 121          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_LEMMI (50S ribosomal protein L14, chloroplastic OS=Lemna minor GN=rpl14 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.821e-28
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KEL+R+NGM IRYDDNAAVVID EGNPKGTRVFGAIARELR+LNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTRKELKRENGMRIRYDDNAAVVIDQEGNPKGTRVFGAIARELRELNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PHAVU (50S ribosomal protein L14, chloroplastic OS=Phaseolus vulgaris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCK+L+R NG+II+YDDNAAVVID EGNPKGTR+F AIARELRQLNFTKIVSLAPEVL
Sbjct:   53 ERSEVIRAVIVRTCKQLKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CUSEX (50S ribosomal protein L14, plastid OS=Cuscuta exaltata GN=rpl14 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.812e-28
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSE++RAVIVRT KEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAI RELR LNFTKIVSLAPEVL
Sbjct:   53 ERSELVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRPLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_LOTJA (50S ribosomal protein L14, chloroplastic OS=Lotus japonicus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKEL+R NG+II+YDDNAAVVID EGNPKGTR+F AIARELRQ NFTKIVSLAPE+L
Sbjct:   53 ERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL 122          
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_FAGEA7.424e-2991.4350S ribosomal protein L14, chloroplastic OS=Fagopy... [more]
RK14_NANDO9.696e-2991.4350S ribosomal protein L14, chloroplastic OS=Nandin... [more]
RK14_CUSRE1.266e-2890.0050S ribosomal protein L14, plastid OS=Cuscuta refl... [more]
RK14_SOYBN1.654e-2890.0050S ribosomal protein L14, chloroplastic OS=Glycin... [more]
RK14_CICAR1.654e-2890.0050S ribosomal protein L14, chloroplastic OS=Cicer ... [more]
RK14_AMBTC2.160e-2891.3050S ribosomal protein L14, chloroplastic OS=Ambore... [more]
RK14_LEMMI2.821e-2891.4350S ribosomal protein L14, chloroplastic OS=Lemna ... [more]
RK14_PHAVU3.685e-2888.5750S ribosomal protein L14, chloroplastic OS=Phaseo... [more]
RK14_CUSEX4.812e-2888.5750S ribosomal protein L14, plastid OS=Cuscuta exal... [more]
RK14_LOTJA6.285e-2887.1450S ribosomal protein L14, chloroplastic OS=Lotus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
back to top