CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SPIOL (50S ribosomal protein L14, chloroplastic OS=Spinacia oleracea GN=rpl14 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 8.208e-28
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAV+VRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKGTR+FGAIARELRQ  F KIVSLAPEVL
Sbjct:   53 ERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPEVL 121
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_OENPA (50S ribosomal protein L14, chloroplastic OS=Oenothera parviflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+ D+G+IIRYDDNAAVVID EGNPKGTRVFGAIA ELR+L+FTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKCDDGIIIRYDDNAAVVIDQEGNPKGTRVFGAIAHELRELSFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_OENGL (50S ribosomal protein L14, chloroplastic OS=Oenothera glazioviana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+ D+G+IIRYDDNAAVVID EGNPKGTRVFGAIA ELR+L+FTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKCDDGIIIRYDDNAAVVIDQEGNPKGTRVFGAIAHELRELSFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_OENEH (50S ribosomal protein L14, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl14 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+ D+G+IIRYDDNAAVVID EGNPKGTRVFGAIA ELR+L+FTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKCDDGIIIRYDDNAAVVIDQEGNPKGTRVFGAIAHELRELSFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_OENBI (50S ribosomal protein L14, chloroplastic OS=Oenothera biennis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+ D+G+IIRYDDNAAVVID EGNPKGTRVFGAIA ELR+L+FTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKCDDGIIIRYDDNAAVVIDQEGNPKGTRVFGAIAHELRELSFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_OENAR (50S ribosomal protein L14, chloroplastic OS=Oenothera argillicola GN=rpl14 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEV+RAVIVRTCKEL+ D+G+IIRYDDNAAVVID EGNPKGTRVFGAIA ELR+L+FTKIVSLAPEVL
Sbjct:   53 ERSEVVRAVIVRTCKELKCDDGIIIRYDDNAAVVIDQEGNPKGTRVFGAIAHELRELSFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PINTH (50S ribosomal protein L14, chloroplastic OS=Pinus thunbergii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            E+SEV+RAV++RTCKE  RDNGM+IR DDNAAVVID EGNPKGTRVFG +A+ELRQLNFTKIVSLAPEVL
Sbjct:   53 EKSEVVRAVVIRTCKEFERDNGMMIRSDDNAAVVIDQEGNPKGTRVFGPVAQELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PINKO (50S ribosomal protein L14, chloroplastic OS=Pinus koraiensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            E+SEV+RAV++RTCKE  RDNGM+IR DDNAAVVID EGNPKGTRVFG +A+ELRQLNFTKIVSLAPEVL
Sbjct:   53 EKSEVVRAVVIRTCKEFERDNGMMIRSDDNAAVVIDQEGNPKGTRVFGPVAQELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CYCTA (50S ribosomal protein L14, chloroplastic OS=Cycas taitungensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.119e-27
Identity = 56/70 (80.00%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            + SE++RAV+VRTCKEL+RDNGMIIR DDNAAV++D EGNP+GTRVFG++ARELRQLNF KIVSLAPEVL
Sbjct:   53 KESEIVRAVVVRTCKELKRDNGMIIRSDDNAAVIVDQEGNPRGTRVFGSVARELRQLNFAKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ORYSJ (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_SPIOL8.208e-2888.5750S ribosomal protein L14, chloroplastic OS=Spinac... [more]
RK14_OENPA1.072e-2787.1450S ribosomal protein L14, chloroplastic OS=Oenoth... [more]
RK14_OENGL1.072e-2787.1450S ribosomal protein L14, chloroplastic OS=Oenoth... [more]
RK14_OENEH1.072e-2787.1450S ribosomal protein L14, chloroplastic OS=Oenoth... [more]
RK14_OENBI1.072e-2787.1450S ribosomal protein L14, chloroplastic OS=Oenoth... [more]
RK14_OENAR1.072e-2787.1450S ribosomal protein L14, chloroplastic OS=Oenoth... [more]
RK14_PINTH2.388e-2782.8650S ribosomal protein L14, chloroplastic OS=Pinus ... [more]
RK14_PINKO2.388e-2782.8650S ribosomal protein L14, chloroplastic OS=Pinus ... [more]
RK14_CYCTA3.119e-2780.0050S ribosomal protein L14, chloroplastic OS=Cycas ... [more]
RK14_ORYSJ6.949e-2784.2950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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