CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ORYSI (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. indica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ORYSA (50S ribosomal protein L14, chloroplastic OS=Oryza sativa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ORYNI (50S ribosomal protein L14, chloroplastic OS=Oryza nivara GN=rpl14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_LOLPR (50S ribosomal protein L14, chloroplastic OS=Lolium perenne GN=rpl14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_HORVU (50S ribosomal protein L14, chloroplastic OS=Hordeum vulgare GN=rpl14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_AGRST (50S ribosomal protein L14, chloroplastic OS=Agrostis stolonifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL 123
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CUSOB (50S ribosomal protein L14, plastid OS=Cuscuta obtusiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 58/70 (82.86%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            E+SEV+RAVIVRT KEL+RDNG+I+RYDDNAAV+ID EGNPKGTR+FGAI RELR+LNF KIVSLAPEVL
Sbjct:   53 EKSEVVRAVIVRTRKELKRDNGIILRYDDNAAVIIDKEGNPKGTRIFGAIPRELRKLNFNKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CUSGR (50S ribosomal protein L14, plastid OS=Cuscuta gronovii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.075e-27
Identity = 58/70 (82.86%), Postives = 66/70 (94.29%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            E+SEV+RAVIVRT KEL+RDNG+I+RYDDNAAV+ID EGNPKGTR+FGAI RELR+LNF KIVSLAPEVL
Sbjct:   53 EKSEVVRAVIVRTRKELKRDNGIILRYDDNAAVIIDKEGNPKGTRIFGAIPRELRKLNFNKIVSLAPEVL 122
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_WHEAT (50S ribosomal protein L14, chloroplastic OS=Triticum aestivum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAIA ELR LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRGLNFTKIVSLAPEVL 123
[Close]
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_BRADI (50S ribosomal protein L14, chloroplastic OS=Brachypodium distachyon GN=rpl14 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -3 
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRTCKE + ++G+IIRYDDNAAV+ID +GNPKGTRVFGAI  ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAITEELRELNFTKIVSLAPEVL 123
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_ORYSI6.949e-2784.2950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYSA6.949e-2784.2950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYNI6.949e-2784.2950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_LOLPR6.949e-2784.2950S ribosomal protein L14, chloroplastic OS=Lolium... [more]
RK14_HORVU6.949e-2784.2950S ribosomal protein L14, chloroplastic OS=Hordeu... [more]
RK14_AGRST6.949e-2784.2950S ribosomal protein L14, chloroplastic OS=Agrost... [more]
RK14_CUSOB9.075e-2782.8650S ribosomal protein L14, plastid OS=Cuscuta obtu... [more]
RK14_CUSGR9.075e-2782.8650S ribosomal protein L14, plastid OS=Cuscuta gron... [more]
RK14_WHEAT2.022e-2684.2950S ribosomal protein L14, chloroplastic OS=Tritic... [more]
RK14_BRADI2.022e-2682.8650S ribosomal protein L14, chloroplastic OS=Brachy... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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