CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ANGEV (50S ribosomal protein L14, chloroplastic OS=Angiopteris evecta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 56/70 (80.00%), Postives = 66/70 (94.29%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SEV+RAV+VRTCKEL+RDNGM IR+DDNAAVVI+ EGNP+GTRVFG IARELR+ NFTKI+SLAPEVL
Sbjct:   53 KKSEVVRAVVVRTCKELKRDNGMRIRFDDNAAVVINQEGNPRGTRVFGPIARELREYNFTKIISLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SORBI (50S ribosomal protein L14, chloroplastic OS=Sorghum bicolor GN=rpl14 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KE + D+G+IIRYDDNAAV+ID +GNPKGTRVFGA+A ELR+LNFTKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNFTKIVSLAPEVL 123          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_JASNU (50S ribosomal protein L14, chloroplastic OS=Jasminum nudiflorum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.683e-26
Identity = 56/70 (80.00%), Postives = 64/70 (91.43%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            E+SEV+RAVIVRTCKEL+RD GMIIRYDDNAA+VID +GNPKG+RVFGAI  ELRQ  FTKI+S+APEVL
Sbjct:   53 EKSEVVRAVIVRTCKELKRDCGMIIRYDDNAAIVIDQKGNPKGSRVFGAIPEELRQFGFTKILSIAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KE + D+G+IIRYDDNAAV+ID +GNPKGTRVFGA+A ELR+LN+TKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.310e-25
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KE + D+G+IIRYDDNAAV+ID +GNPKGTRVFGA+A ELR+LN+TKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_MARPO (50S ribosomal protein L14, chloroplastic OS=Marchantia polymorpha GN=rpl14 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.712e-25
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SE++RAVIVRTCKE +R+NG II++DDNAAVVI+ EGNPKGTRVFG IARELR+ NFTKIVSLAPEVL
Sbjct:   53 KKSEIVRAVIVRTCKEFKRNNGSIIKFDDNAAVVINQEGNPKGTRVFGPIARELRESNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.235e-25
Identity = 54/70 (77.14%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SEV+RAV+VRTCKEL+R NG II++DDNAAV+I+ EGNPKGTRVFG +ARELR+ NFTKIVSLAPEVL
Sbjct:   53 KKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARELRESNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_STAPU (50S ribosomal protein L14, chloroplastic OS=Staurastrum punctulatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.919e-25
Identity = 53/70 (75.71%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SEV+RAVIVRTCK ++R+NGMI+R+DDNAAVV++ EGNP+GTRVFG +ARELR  NFTKIVSLAPEVL
Sbjct:   53 KKSEVVRAVIVRTCKGIKRNNGMILRFDDNAAVVVNQEGNPRGTRVFGPVARELRDFNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_MAIZE (50S ribosomal protein L14, chloroplastic OS=Zea mays GN=rpl14 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.919e-25
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ERSEVIRAVIVRT KE + D+G+IIRYDDNAAV+ID +GNPKGTRVFGA+A ELR+LN TKIVSLAPEVL
Sbjct:   54 ERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNLTKIVSLAPEVL 123          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_HUPLU (50S ribosomal protein L14, chloroplastic OS=Huperzia lucidula GN=rpl14 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.919e-25
Identity = 52/69 (75.36%), Postives = 65/69 (94.20%), Query Frame = -3
Query:  347 RSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 553
            +SE++RAV+VRTCKEL+R+NGMII++DDNAAV+I+ EGNP+GTRVFG +ARE R+ NFTKIVSLAPEVL
Sbjct:   54 KSEIVRAVVVRTCKELKRNNGMIIQFDDNAAVIINQEGNPRGTRVFGPVARESREFNFTKIVSLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_ANGEV2.022e-2680.0050S ribosomal protein L14, chloroplastic OS=Angiop... [more]
RK14_SORBI5.883e-2682.8650S ribosomal protein L14, chloroplastic OS=Sorghu... [more]
RK14_JASNU7.683e-2680.0050S ribosomal protein L14, chloroplastic OS=Jasmin... [more]
RK14_SACOF1.310e-2581.4350S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_SACHY1.310e-2581.4350S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_MARPO1.712e-2578.5750S ribosomal protein L14, chloroplastic OS=Marcha... [more]
RK14_PHYPA2.235e-2577.1450S ribosomal protein L14, chloroplastic OS=Physco... [more]
RK14_STAPU2.919e-2575.7150S ribosomal protein L14, chloroplastic OS=Staura... [more]
RK14_MAIZE2.919e-2581.4350S ribosomal protein L14, chloroplastic OS=Zea ma... [more]
RK14_HUPLU2.919e-2575.3650S ribosomal protein L14, chloroplastic OS=Huperz... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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