CX300229

Overview
NameCX300229
Unique NameCX300229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CRYJA (50S ribosomal protein L14, chloroplastic OS=Cryptomeria japonica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.919e-25
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            E SEV+RAV++RTCKEL+R +GMIIR DDNAAVVID +GNP+GTRVFG++  ELR+LNFTKI+SLAPEVL
Sbjct:   53 EESEVVRAVVIRTCKELKRSDGMIIRSDDNAAVVIDQKGNPRGTRVFGSVTEELRELNFTKIISLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.980e-25
Identity = 54/70 (77.14%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SE++RAVIVRT K L+RDNGM++R+DDNAAVVI+ EGNP+GTRVFG +ARELR LNFTKIVSLAPEVL
Sbjct:   53 KKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_MESVI (50S ribosomal protein L14, chloroplastic OS=Mesostigma viride GN=rpl14 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.980e-25
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SEV+RAV+VRTCK +RR+NGM IR+DDNAAVVI+ +GNPKGTRVFG +ARELR  NFTKIVSLAPEVL
Sbjct:   53 KKSEVVRAVVVRTCKGIRRENGMTIRFDDNAAVVINKDGNPKGTRVFGPVARELRDRNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CHAGL (50S ribosomal protein L14, chloroplastic OS=Chaetosphaeridium globosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.504e-25
Identity = 52/70 (74.29%), Postives = 65/70 (92.86%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SEV+RAVIVRTCKEL+R NG I+R+D+NAAV+I+ EGNP+GTR+FG +ARELR+ NFTKIVSLAPEVL
Sbjct:   53 KKSEVVRAVIVRTCKELKRKNGTILRFDENAAVIINQEGNPRGTRIFGPVARELREANFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RR8_CITSI (30S ribosomal protein S8, chloroplastic OS=Citrus sinensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = -2
Query:    3 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVE--NKKEFLVL 185
            MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVE  NKKEFLVL
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVL 63          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.109e-24
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            +RSEV+RAV+VRT K LRRDNGM IR+DDNAAVVI+ EGNP+GTRVFG +ARELR  NFTKIVSLAPEVL
Sbjct:   53 KRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRDRNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RL14_GLOVI (50S ribosomal protein L14 OS=Gloeobacter violaceus GN=rplN PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 51/70 (72.86%), Postives = 64/70 (91.43%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SEV+RAV+VRT + +RRDNGM+IR+DDNAAV+ID  GNP+GTRVFG +ARELR+ NFTKI+SLAPEVL
Sbjct:   64 KKSEVVRAVVVRTRQAIRRDNGMVIRFDDNAAVIIDKNGNPRGTRVFGPVARELREKNFTKIISLAPEVL 133          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_CHLRE (50S ribosomal protein L14, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            +RS+++RAVIVRT K +RR+NGM IR+DDNAAV+I+ EGNP+GTRVFG IARELR  NFTKIVSLAPEVL
Sbjct:   53 KRSDIVRAVIVRTRKGIRRENGMAIRFDDNAAVIINKEGNPRGTRVFGPIARELRDKNFTKIVSLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_ANTFO (50S ribosomal protein L14, chloroplastic OS=Anthoceros formosae GN=rpl14 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.733e-23
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            ++SEV+RAVIVRTCKE+RRDNGM IR+DDN A   + EGNPKGTRVFG +ARE R  NFTKI+ LAPEVL
Sbjct:   53 KKSEVVRAVIVRTCKEVRRDNGMTIRFDDNVAATTNQEGNPKGTRVFGPVARESRGYNFTKIIPLAPEVL 122          
BLAST of CX300229 vs. ExPASy Swiss-Prot
Match: RK14_WELMI (50S ribosomal protein L14, chloroplastic OS=Welwitschia mirabilis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = -3
Query:  347 ERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 556
            E SE++RAVI+RT KE +RD+GM IR DDNAA++ID +GNPKGTRVFG + +ELRQ NFTKI+SLAPEVL
Sbjct:   53 EESEIVRAVIIRTSKEFQRDDGMRIRSDDNAAIIIDQKGNPKGTRVFGPVLQELRQYNFTKIISLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CX300229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_CRYJA2.919e-2575.7150S ribosomal protein L14, chloroplastic OS=Crypto... [more]
RK14_ZYGCR4.980e-2577.1450S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RK14_MESVI4.980e-2577.1450S ribosomal protein L14, chloroplastic OS=Mesost... [more]
RK14_CHAGL6.504e-2574.2950S ribosomal protein L14, chloroplastic OS=Chaeto... [more]
RR8_CITSI8.494e-2596.8330S ribosomal protein S8, chloroplastic OS=Citrus ... [more]
RK14_CHLAT1.109e-2480.0050S ribosomal protein L14, chloroplastic OS=Chloro... [more]
RL14_GLOVI3.228e-2472.8650S ribosomal protein L14 OS=Gloeobacter violaceus... [more]
RK14_CHLRE1.227e-2375.7150S ribosomal protein L14, chloroplastic OS=Chlamy... [more]
RK14_ANTFO2.733e-2372.8650S ribosomal protein L14, chloroplastic OS=Anthoc... [more]
RK14_WELMI4.661e-2371.4350S ribosomal protein L14, chloroplastic OS=Welwit... [more]

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Properties
Property NameValue
Genbank descriptionC07007F11SK SaltLeaf1 Citrus clementina cDNA clone C07007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300229 ID=CX300229; Name=CX300229; organism=Citrus clementina; type=EST; length=558bp
GTTAAAACCAAAAACTCTTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTC
GATAAAACCCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAG
TAGATGCTATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATA
GAAGTTATTATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATT
TTGTTGCTTCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAA
ATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATTTTGAGTTATC
TATTTTATTTTCTTTCATACTATCACTATATCGCGGGCCCCTCTTATAAT
ACTTCAGGTGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTC
CCGGGCGATCGCACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGAT
CAATGACAACTGCAGCATTGTCATCGTACCGTATTATCATACCGTTATCA
CGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGA
TCTTTCTA
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