CX300230

Overview
NameCX300230
Unique NameCX300230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.784e-20
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 159
            LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK
Sbjct:   24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.796e-19
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.415e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL++YKVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 189
            LAVL++YKVD  GK++RLR+ECPN  CGAG FMA   DR YCG+C LTYV++K+
Sbjct:   24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77          
The following BLAST results are available for this feature:
BLAST of CX300230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RS27A_DAUCA6.784e-2095.4540S ribosomal protein S27a (Fragment) OS=Daucus ca... [more]
RS27A_CHICK3.367e-1971.7040S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN4.397e-1971.7040S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO4.397e-1971.7040S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN4.397e-1971.7040S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]
RS27A_ICTPU9.796e-1971.7040S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RS27A_RAT1.279e-1869.8140S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE1.279e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
RS27A_DROME1.415e-1767.9240S ribosomal protein S27a OS=Drosophila melanogas... [more]
RS27A_NEUCR3.484e-1664.8140S ribosomal protein S27a OS=Neurospora crassa GN... [more]

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Properties
Property NameValue
Genbank descriptionC07007F12SK SaltLeaf1 Citrus clementina cDNA clone C07007F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300230 ID=CX300230; Name=CX300230; organism=Citrus clementina; type=EST; length=302bp
ATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAA
GGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATG
CTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTAC
TGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGCGATTG
ATCGAGATTAGGTGGTTGGTTTGCTATTTTTAATTAGTATTAATTACTAT
GGGTTTTGGGGCTCAAAAATTATGACTCTTTCGGAATTTTGTTTGACTAT
AT
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