CX300230

Overview
NameCX300230
Unique NameCX300230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300230_ssr10 microsatellite CX300230_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9240 contig Ccv1_Contig9240:284..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_KLULA (40S ribosomal protein S27a OS=Kluyveromyces lactis GN=ubi3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 186
            LAVL +YKVDD GKV +LRKECPN  CG G F+ANH DR YCGKC  T+  QK
Sbjct:   24 LAVLNYYKVDDEGKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTFATQK 74          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_PLUXY (40S ribosomal protein S27a OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 183
            LAVL+FYKVD++GK+ RLR+EC + +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTSEQCGAGVFMAVMEDRHYCGKCHRTMVFK 75          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_SPOFR (40S ribosomal protein S27a OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 183
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_MANSE (40S ribosomal protein S27a OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 183
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27B_SCHPO (40S ribosomal protein S27b OS=Schizosaccharomyces pombe GN=ubi5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 171
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_SCHPO (40S ribosomal protein S27a OS=Schizosaccharomyces pombe GN=ubi3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 171
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_CAEBR (40S ribosomal protein S27a OS=Caenorhabditis briggsae GN=ubl-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 189
            LAVL++YKVD++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.114e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 189
            LAVL++YK+D++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.709e-13
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTY 174
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72          
BLAST of CX300230 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   28 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 177
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC  T V
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLV 74          
The following BLAST results are available for this feature:
BLAST of CX300230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RS27A_KLULA1.464e-1467.9240S ribosomal protein S27a OS=Kluyveromyces lactis... [more]
RS27A_PLUXY3.261e-1463.4640S ribosomal protein S27a OS=Plutella xylostella ... [more]
RS27A_SPOFR4.259e-1463.4640S ribosomal protein S27a OS=Spodoptera frugiperd... [more]
RS27A_MANSE4.259e-1463.4640S ribosomal protein S27a OS=Manduca sexta PE=3 S... [more]
RS27B_SCHPO1.239e-1370.8340S ribosomal protein S27b OS=Schizosaccharomyces ... [more]
RS27A_SCHPO1.239e-1370.8340S ribosomal protein S27a OS=Schizosaccharomyces ... [more]
RS27A_CAEBR1.618e-1359.2640S ribosomal protein S27a OS=Caenorhabditis brigg... [more]
RS27A_CAEEL2.114e-1357.4140S ribosomal protein S27a OS=Caenorhabditis elega... [more]
RS37_YEAST4.709e-1365.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RS27A_DICDI3.986e-1258.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC07007F12SK SaltLeaf1 Citrus clementina cDNA clone C07007F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300230 ID=CX300230; Name=CX300230; organism=Citrus clementina; type=EST; length=302bp
ATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAA
GGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATG
CTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTAC
TGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGCGATTG
ATCGAGATTAGGTGGTTGGTTTGCTATTTTTAATTAGTATTAATTACTAT
GGGTTTTGGGGCTCAAAAATTATGACTCTTTCGGAATTTTGTTTGACTAT
AT
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