CX300234
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 9.330e-44 Identity = 87/127 (68.50%), Postives = 96/127 (75.59%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381 RFEPCGLIQL MRYGT + ASTGGLVDT+ EG TGF MG SVDC V+P DV V+TT++RA+ GT A EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P Sbjct: 477 RFEPCGLIQLQGMRYGTPCVCASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAVKVVGTPAYQEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLAMENVAAP 603
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 7.898e-43 Identity = 86/127 (67.72%), Postives = 96/127 (75.59%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381 RFEPCGLIQL MRYGT ASTGGLVDTV EG TGF MG SVDC+ V+P DV V+ T++RA+ GT A EM++N M QDLSWKGPAK WE LL L VAGS PGI+G+EIAPLAKENVA P Sbjct: 483 RFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 7.898e-43 Identity = 86/127 (67.72%), Postives = 96/127 (75.59%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381 RFEPCGLIQL MRYGT ASTGGLVDTV EG TGF MG SVDC+ V+P DV V+ T++RA+ GT A EM++N M QDLSWKGPAK WE LL L VAGS PGI+G+EIAPLAKENVA P Sbjct: 483 RFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.032e-42 Identity = 87/127 (68.50%), Postives = 94/127 (74.02%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381 RFEPCGLIQL MRYGT ASTGGLVDT+ EG TGF MG SVDC V+P DV V TT++RA+ GT A EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P Sbjct: 489 RFEPCGLIQLQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVVTTLKRAVKVVGTPAYHEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLALENVAAP 615
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.001e-42 Identity = 85/127 (66.93%), Postives = 96/127 (75.59%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381 RFEPCGLIQL MRYGT ASTGGLVDTV EG TGF MG SV+C+ V+P DV V+ T++RA+ GT A EM++N M QDLSWKGPAK WE LL L VAGS PGI+G+EIAPLAKENVA P Sbjct: 483 RFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13 Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWE 288 R+EPCGL Q++++RYGTVPIV +TGGLVDTVE G G + + +A+ +RRALA Y + L E + GM +D SW +++E Sbjct: 380 RYEPCGLNQMYSLRYGTVPIVRATGGLVDTVEGGLDGNGI--------LFEAFHKSALLAAIRRALALYADPSRLDEFRRRGMEKDFSWGASGRRYE 468
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13 Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEE 291 R+EPCGL QL AMRYGT+PI TGGL DTVE+ TGF +S +A++ + R + Y Q EM++ M +D SW +KK+ E Sbjct: 394 RYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS----------SSALTHAISRFIEIYNNKQKFLEMIREAMKRDFSWSNSSKKYIE 481
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13 Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 291 RFEPCGL QL A+ YGTVPIV TGGL DTV EG GF FS D A V+RALA Y + ++M+ GM +D+SW+ A K+EE Sbjct: 380 RFEPCGLSQLIALSYGTVPIVRRTGGLADTVIDVTANPREG-NGFSFTEFSAD----------ACWDAVQRALAAYRDREGWRKIMRRGMLRDVSWRSAAGKYEE 473
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13 Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKW 285 R+EPCGL Q++++RYGTVPIV +TGGL DT+E + T G V+ D +D TVR+AL + + A ++M+NGMA+D SW AK++ Sbjct: 377 RYEPCGLNQIYSLRYGTVPIVRATGGLDDTIENWDPITNRGTGFKFVEYSGEDMLD------TVRKALELFKDKTAWQKLMRNGMARDFSWNTAAKEY 468
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13 Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 288 RFEPCGL Q++++RYGTVP+V S GGL DTVE+ F GF G+ E A+ T RRAL + +A +++ GMA+D SW+ A ++E Sbjct: 376 RFEPCGLNQMYSLRYGTVPVVRSVGGLADTVED-FDGFARGTGFRFAEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467 The following BLAST results are available for this feature:
BLAST of CX300234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300234 ID=CX300234; Name=CX300234; organism=Citrus clementina; type=EST; length=591bpback to top |