CX300234

Overview
NameCX300234
Unique NameCX300234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.330e-44
Identity = 87/127 (68.50%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381
            RFEPCGLIQL  MRYGT  + ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P
Sbjct:  477 RFEPCGLIQLQGMRYGTPCVCASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAVKVVGTPAYQEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLAMENVAAP 603          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.898e-43
Identity = 86/127 (67.72%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381
            RFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  483 RFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 7.898e-43
Identity = 86/127 (67.72%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381
            RFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  483 RFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.032e-42
Identity = 87/127 (68.50%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381
            RFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P
Sbjct:  489 RFEPCGLIQLQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVVTTLKRAVKVVGTPAYHEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLALENVAAP 615          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.001e-42
Identity = 85/127 (66.93%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 381
            RFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SV+C+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct:  483 RFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 609          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWE 288
            R+EPCGL Q++++RYGTVPIV +TGGLVDTVE G  G  +          +    +A+   +RRALA Y   + L E  + GM +D SW    +++E
Sbjct:  380 RYEPCGLNQMYSLRYGTVPIVRATGGLVDTVEGGLDGNGI--------LFEAFHKSALLAAIRRALALYADPSRLDEFRRRGMEKDFSWGASGRRYE 468          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEE 291
            R+EPCGL QL AMRYGT+PI   TGGL DTVE+  TGF    +S           +A++  + R +  Y   Q   EM++  M +D SW   +KK+ E
Sbjct:  394 RYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS----------SSALTHAISRFIEIYNNKQKFLEMIREAMKRDFSWSNSSKKYIE 481          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 291
            RFEPCGL QL A+ YGTVPIV  TGGL DTV        EG  GF    FS D          A    V+RALA Y   +   ++M+ GM +D+SW+  A K+EE
Sbjct:  380 RFEPCGLSQLIALSYGTVPIVRRTGGLADTVIDVTANPREG-NGFSFTEFSAD----------ACWDAVQRALAAYRDREGWRKIMRRGMLRDVSWRSAAGKYEE 473          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAEMMKNGMAQDLSWKGPAKKW 285
            R+EPCGL Q++++RYGTVPIV +TGGL DT+E  +  T    G   V+    D +D      TVR+AL  +  + A  ++M+NGMA+D SW   AK++
Sbjct:  377 RYEPCGLNQIYSLRYGTVPIVRATGGLDDTIENWDPITNRGTGFKFVEYSGEDMLD------TVRKALELFKDKTAWQKLMRNGMARDFSWNTAAKEY 468          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 288
            RFEPCGL Q++++RYGTVP+V S GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  376 RFEPCGLNQMYSLRYGTVPVVRSVGGLADTVED-FDGFARGTGFRFAEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
The following BLAST results are available for this feature:
BLAST of CX300234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
SSG1_HORVU9.330e-4468.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSJ7.898e-4367.72Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI7.898e-4367.72Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT1.032e-4268.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL3.001e-4266.93Granule-bound starch synthase 1, chloroplastic/amy... [more]
GLGA_MYXXD1.314e-1342.27Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
GLGA_THEYD1.716e-1341.84Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA2_GEOMG2.927e-1345.71Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_ACIBL3.823e-1343.88Glycogen synthase OS=Acidobacteria bacterium (stra... [more]
GLGA_ANADE6.521e-1344.33Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007G04SK SaltLeaf1 Citrus clementina cDNA clone C07007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300234 ID=CX300234; Name=CX300234; organism=Citrus clementina; type=EST; length=591bp
AGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAAC
CGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAG
GCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTG
GATCCAGTAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGC
AACCTATGGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTC
AAGATCTTTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTT
AACCTGGAAGTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGC
TCCTCTTGCCAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAAT
CTCCACTTTTATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACC
CAAGATATTACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCG
CTATTTTCAATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATA
ATGAAATATTAAGTTCTGTTTTAAAAAAAAAAAAAAAAAAA
back to top