CX300234

Overview
NameCX300234
Unique NameCX300234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1559..2149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_RHIL3 (Glycogen synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 285
            RFEPCGL QL+ +RYG VPIVA TGGL DTV +          +   +   PV    +   +RRA+  Y  + L  ++ K GM  D+SW+  A+++
Sbjct:  374 RFEPCGLTQLYGLRYGCVPIVARTGGLNDTVIDANHAALAAKVATGIQFA-PVTETGMLQAIRRAMHFYQDRKLWTQLQKQGMKSDVSWEKSAERY 468          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 288
            RFEPCGL Q++++RYGT+P+V + GGL DTVE+ F G+  G+         P    A+   VRRAL  +   +A   MM  GMA D SW   A+ +E
Sbjct:  375 RFEPCGLNQMYSLRYGTIPVVRAVGGLEDTVED-FDGWSRGT-GFKFRDYHP---QAMLLAVRRALEAHRDRRAWRAMMLRGMALDFSWDRSAQAYE 466          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 285
            RFEPCGL QL+A+RYGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  378 RFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIRD (Glycogen synthase 1 OS=Rhizobium radiobacter GN=glgA1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 276
            RFEPCGL QL+A+RYG +P+VA TGGL DTV +      + S +       PV +  +   +RR +  Y    L  +M K GM  D+SW+  A
Sbjct:  374 RFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA1_AGRT5 (Glycogen synthase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPA 276
            RFEPCGL QL+A+RYG +P+VA TGGL DTV +      + S +       PV +  +   +RR +  Y    L  +M K GM  D+SW+  A
Sbjct:  374 RFEPCGLTQLYALRYGCIPVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_SYNPX (Glycogen synthase OS=Synechococcus sp. (strain WH8102) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 49/134 (36.57%), Postives = 66/134 (49.25%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG-SEPGIDGEEIAPLAKENVATP 381
            RFEPCG+ QL+AMRYG+VP+V   GGLVDTV      +   TGF    F       +PVD    +  VR   A     +  E+ K GM QD SW   A  ++  ++  +V G  EP  D   +   ++   A P
Sbjct:  356 RFEPCGISQLYAMRYGSVPVVRKVGGLVDTVPPHSPADASGTGFCFDRF-------EPVDF--YTALVRAWEAYRHRDSWQELQKRGMQQDYSWDRSAIDYD--VMYRDVCGLKEPTPDAAMVEQFSQGQAADP 478          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEE 291
            R+EPCGL Q+ A+RYG VP+V  TGGL DT+ +E     +   FS      D     A+   + RA+  Y  +A   +MMK GMA D SW   A K+EE
Sbjct:  380 RYEPCGLGQMIALRYGAVPVVRKTGGLADTIFDERDQPKEPNGFS-----FDEYTPEALWEALSRAVEAYSDKAAWKKMMKRGMAGDFSWNTSALKYEE 473          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_ELUMP (Glycogen synthase OS=Elusimicrobium minutum (strain Pei191) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 291
            RFEPCGL Q+ +MRYGTVPIV+  GGL+DTV+  +G T +  G F ++           +  ++  AL  Y   +    ++KNGM +D SW   A+++++
Sbjct:  381 RFEPCGLSQMISMRYGTVPIVSRVGGLLDTVKGYDGITKYATGFFILE------FSETGIERSLDYALKYYQDKRCWGMLIKNGMEKDFSWTKSAQEYQD 474          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPH (Glycogen synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    4 FEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA--EMMKNGMAQDLSWKGPAKKWEE 291
            FEPCGL QL ++RYGTVPIV  TGGLVDTV      E   TGF   +++             +  T+R A   Y  +     +++  GMA+D SWK  A+K+EE
Sbjct:  380 FEPCGLSQLMSLRYGTVPIVRETGGLVDTVEPYNQHESTGTGFTFKNYNAH----------EMLYTIRFAKEIYQDKKREWNKIIDRGMAKDFSWKTSARKYEE 473          
BLAST of CX300234 vs. ExPASy Swiss-Prot
Match: GLGA2_BRAJA (Glycogen synthase 2 OS=Bradyrhizobium japonicum GN=glgA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA-LATYGTQALAEMMKNGMAQDLSWKGPA 276
            RFEPCGL QL A+RYG VPIV+  GGL DT+    E G   TGF+ G          PV   A++ T+R+A  A +      ++ +NG+A D+SW+  A
Sbjct:  378 RFEPCGLTQLCALRYGAVPIVSRVGGLEDTIVDIGEAGREATGFKFG----------PVTADALAGTLRKANTAFHDKLTWRQLQRNGLATDVSWRSRA 466          
The following BLAST results are available for this feature:
BLAST of CX300234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GLGA_RHIL32.740e-1139.58Glycogen synthase OS=Rhizobium leguminosarum bv. v... [more]
GLGA_ANADF2.740e-1143.30Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA2_NITOC2.740e-1140.95Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA1_RHIRD2.740e-1140.86Glycogen synthase 1 OS=Rhizobium radiobacter GN=gl... [more]
GLGA1_AGRT52.740e-1140.86Glycogen synthase 1 OS=Agrobacterium tumefaciens (... [more]
GLGA_SYNPX3.578e-1136.57Glycogen synthase OS=Synechococcus sp. (strain WH8... [more]
GLGA_GEOSF3.578e-1142.42Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_ELUMP4.674e-1138.00Glycogen synthase OS=Elusimicrobium minutum (strai... [more]
GLGA_CLOPH4.674e-1141.35Glycogen synthase OS=Clostridium phytofermentans (... [more]
GLGA2_BRAJA6.104e-1142.42Glycogen synthase 2 OS=Bradyrhizobium japonicum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007G04SK SaltLeaf1 Citrus clementina cDNA clone C07007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300234 ID=CX300234; Name=CX300234; organism=Citrus clementina; type=EST; length=591bp
AGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAAC
CGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAG
GCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTG
GATCCAGTAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGC
AACCTATGGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTC
AAGATCTTTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTT
AACCTGGAAGTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGC
TCCTCTTGCCAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAAT
CTCCACTTTTATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACC
CAAGATATTACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCG
CTATTTTCAATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATA
ATGAAATATTAAGTTCTGTTTTAAAAAAAAAAAAAAAAAAA
back to top