CX300236

Overview
NameCX300236
Unique NameCX300236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS16_ARATH (3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 70/194 (36.08%), Postives = 104/194 (53.61%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            + ++N  A+VVSTE++  N Y G  KSM+++N LFR GG ++LL+N    + +A  +L   VR H G++D +YEC  Q ED+ G  G                +N+  L P +LP+ E+F + ++   +  +        P+         K   EHFC+H GGRA+ID   K L L   D+E +RM LHRFGN
Sbjct:  236 QVHRNTYALVVSTENITQNLYMGNNKSMLVTNCLFRIGGAAILLSNRSIDRKRAKYELVHTVRVHTGADDRSYECATQEEDEDGIVGVSLSKNLPMVAARTLKINIATLGPLVLPISEKFHFFVRFVKKKFLNPKLKHYIPD--------FKLAFEHFCIHAGGRALIDEMEKNLHLTPLDVEASRMTLHRFGN 421          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.649e-29
Identity = 71/192 (36.98%), Postives = 105/192 (54.69%), Query Frame = 1
Query:    7 YKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            ++N  A+VVSTE++  NWY G +KSM++ N LFR GG ++LL+N    K ++  +L  +VRTH G++D+A+ C  Q +D  G  G                 N+  L P +LP+ EQ       ++ + + K   + K +  +    + K   EHFC+H GGRAVID   K L L    +E +RM LHRFGN
Sbjct:  265 HRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRDKRRSKYRLVHVVRTHRGADDKAFRCVYQEQDDTGRTGVSLSKDLMAIAGETLKTNITTLGPLVLPISEQI-----LFFMTLVVKKLFNGKVKPYIP---DFKLAFEHFCIHAGGRAVIDELEKNLQLSPVHVEASRMTLHRFGN 448          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.649e-29
Identity = 73/192 (38.02%), Postives = 105/192 (54.69%), Query Frame = 1
Query:    7 YKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            +KN  A+VVSTE++    Y G  +SMM+SN LFR GG ++LL+N    + ++  KL   VRTH G++D+++ C  Q +D+ G  G               T N+  L P ILPL E+F      ++ + + K     K +       + K  ++HFC+H GGRAVID   K LGL   D+E +R  LHRFGN
Sbjct:  240 HKNTYALVVSTENITQGIYAGENRSMMVSNCLFRVGGAAILLSNKSGDRRRSKYKLVHTVRTHTGADDKSFRCVQQEDDESGKIGVCLSKDITNVAGTTLTKNIATLGPLILPLSEKF-----LFFATFVAKKLLKDKIKHYYVP--DFKLAVDHFCIHAGGRAVIDELEKNLGLSPIDVEASRSTLHRFGN 424          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 71/194 (36.60%), Postives = 107/194 (55.15%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            + + N  AI+VSTE + PN+Y G E++M+L N LFR G  ++ ++N R+ + +A  KL+ LVRTH G++D+++ C  + ED++GH G                 N+  + P +LP  EQ       +  S I +   + K +  +    + K   EHFC+H GGRAVID   K L L    +E +RM LHRFGN
Sbjct:  240 QVHPNSNAIIVSTEIITPNYYQGNERAMLLPNCLFRMGAAAIHMSNRRSDRWRAKYKLSHLVRTHRGADDKSFYCVYEQEDKEGHVGINLSKDLMAIAGEALKANITTIGPLVLPASEQL-----LFLTSLIGRKIFNPKWKPYIP---DFKLAFEHFCIHAGGRAVIDELQKNLQLSGEHVEASRMTLHRFGN 425          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.381e-28
Identity = 68/194 (35.05%), Postives = 106/194 (54.64%), Query Frame = 1
Query:    1 RTYKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            + ++N  A+VVSTE++  NWY G +K+M++ N LFR GG ++LL+N    + ++  KL   VRTH G+ ++A+ C  Q +D  G  G                 N+  L P +LP+ EQ       ++ + + K   ++K +  +    + K   +HFC+H GGRAVID   K L L +  +E +RM LHRFGN
Sbjct:  259 QVHRNTYAVVVSTENITQNWYFGNKKAMLIPNCLFRVGGSAILLSNKGKDRRRSKYKLVHTVRTHKGAVEKAFNCVYQEQDDNGKTGVSLSKDLMAIAGEALKANITTLGPLVLPISEQI-----LFFMTLVTKKLFNSKLKPYIP---DFKLAFDHFCIHAGGRAVIDELEKNLQLSQTHVEASRMTLHRFGN 444          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.046e-28
Identity = 70/192 (36.46%), Postives = 105/192 (54.69%), Query Frame = 1
Query:   13 NKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHP--GFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            N  A+VVSTE++  NWY G ++SM+LSN +FR GG ++LL+N  + + ++  +L   VRTH GS+D A+ C  Q ED   +   G                 N+  L P +LP+ EQ       ++ + + +   + K   +     + K   EHFC+H GGRAV+D   K L L E+ +EP+RM L+RFGN
Sbjct:  260 NSYALVVSTENITLNWYLGNDRSMLLSNCIFRMGGAAVLLSNRSSDRCRSKYQLIHTVRTHKGSDDNAFNCVYQREDNDDNKQIGVSLSKNLMAIAGEALKTNITTLGPLVLPMSEQL-----LFFATLVARKVFNVK--KIKPYIPDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGN 444          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.543e-27
Identity = 70/194 (36.08%), Postives = 105/194 (54.12%), Query Frame = 1
Query:   13 NKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVED----QQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            N  A+VVSTE++  NWY G ++SM+LSN +FR GG ++LL+N  + + ++  +L   VRTH G++D A+ C  Q ED    + G  G                 N+  L P +LP+ EQ       ++ + + +     K   +     + K   EHFC+H GGRAV+D   K L L E+ +EP+RM L+RFGN
Sbjct:  266 NSYALVVSTENITLNWYLGNDRSMLLSNCIFRMGGAAVLLSNRSSDRSRSKYQLIHTVRTHKGADDNAFGCVYQREDNNAEETGKIGVSLSKNLMAIAGEALKTNITTLGPLVLPMSEQL-----LFFATLVARKVFKVK--KIKPYIPDFKLAFEHFCIHAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGN 452          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 68/192 (35.42%), Postives = 103/192 (53.65%), Query Frame = 1
Query:    7 YKNKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            ++N  A+VVSTE++  NWY G +K+M++ N LFR GG ++LL+N    + ++  KL   VRTH GS++ A+ C  Q +D+    G                 N+  L P +LP+ EQ       ++ + + K   + K +       + K  ++HFC+H GGRAVID   K L L    +E +RM LHRFGN
Sbjct:  235 HRNTFALVVSTENITQNWYFGNKKAMLIPNCLFRVGGSAVLLSNKPLDRKRSKYKLVHTVRTHKGSDENAFNCVYQEQDECLKTGVSLSKDLMAIAGEALKTNITSLGPLVLPISEQI-----LFFATFVAKRLFNDKKKKPYIP--DFKLALDHFCIHAGGRAVIDELEKSLKLSPKHVEASRMTLHRFGN 419          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 66/190 (34.74%), Postives = 101/190 (53.16%), Query Frame = 1
Query:   13 NKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQFGYVIQSYYESRIRKSTSSTKPEAVLGAGLNLKAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            N  A+V+S E++  NWY G ++S ++SN LFR GG ++LL+N R  + ++  +L   VRTH G++D+ + C  Q ED     G                 N+  L P +LP  EQ       ++ + + +     K +  +    + K   EHFC+H GGRAV+D   K L L E+ +EP+RM L+RFGN
Sbjct:  255 NTYAMVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNKRWDRRRSKYELVDTVRTHKGADDKCFGCITQEEDSASKIGVTLSKELMAVAGDALKTNITTLGPLVLPTSEQL-----LFFATLVGRKLFKMKIKPYIP---DFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHMEPSRMTLYRFGN 436          
BLAST of CX300236 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 68/208 (32.69%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   13 NKLAIVVSTESMGPNWYCGREKSMMLSNILFRSGGCSMLLTNNRALKHKAILKLNCLVRTHFGSNDEAYECCMQVEDQQGHPGFRXXXXXXXXXXXXFTMNLQVLVPKILPLREQ---FGYVIQSYYESRIRKSTSST-------KPEAVLGAGLNL--------KAGIEHFCLHPGGRAVIDGTGKGLGLDEYDLEPARMALHRFGN 582
            N  A+VVSTE +G NWY G +KSM++ N  FR G  +++L+N R     A  +L  +VRTH  ++D ++    Q ED+QG  G +               N+  L P +LP  EQ   F  +++  +    + ST+++       K   +  +  +L        K   EHFC H   + V++   K LGL E ++E +RM LHRFGN
Sbjct:  276 NSYAVVVSTEMVGYNWYVGSDKSMVIPNCFFRMGCSAVMLSNRRRDFRHAKYRLEHIVRTHKAADDRSFRSVYQEEDEQGFKGLKISRDLMEVGGEALKTNITTLGPLVLPFSEQLLFFAALLRRTFSPAAKTSTTTSFSTSATAKTNGIKSSSSDLSKPYIPDYKLAFEHFCFHAASKVVLEELQKNLGLSEENMEASRMTLHRFGN 483          
The following BLAST results are available for this feature:
BLAST of CX300236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
KCS16_ARATH9.665e-3036.083-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana... [more]
KCS4_ARATH1.649e-2936.983-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS18_ARATH1.649e-2938.023-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]
KCS6_ARATH8.182e-2936.603-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH2.381e-2835.053-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS17_ARATH9.046e-2836.463-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS19_ARATH1.543e-2736.083-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS2_ARATH2.228e-2635.42Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS11_ARATH2.228e-2634.743-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS10_ARATH3.801e-2632.693-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC07007G06SK SaltLeaf1 Citrus clementina cDNA clone C07007G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300236 ID=CX300236; Name=CX300236; organism=Citrus clementina; type=EST; length=583bp
AGAACCTACAAAAACAAGCTTGCAATTGTTGTGAGCACAGAGTCCATGGG
ACCTAACTGGTATTGCGGCAGAGAAAAATCTATGATGCTTTCGAATATTT
TGTTCCGCTCAGGTGGGTGCTCAATGCTTTTGACGAACAACAGAGCGTTA
AAGCACAAAGCAATCTTGAAGTTGAACTGTTTAGTGAGAACCCATTTTGG
CTCAAACGATGAAGCTTATGAATGCTGTATGCAAGTTGAAGATCAACAAG
GGCACCCCGGCTTTCGCCTGACGAAAAAGCTACCAAAAGCTGCAGCTCTG
GCTTTCACAATGAATCTCCAGGTTCTTGTTCCGAAAATATTGCCTCTCAG
AGAGCAATTTGGGTATGTAATCCAATCCTATTATGAAAGCAGAATCAGAA
AAAGCACTTCTAGTACTAAACCTGAAGCAGTACTCGGAGCAGGGTTGAAC
CTGAAAGCTGGAATTGAGCATTTCTGCTTACATCCTGGAGGAAGAGCTGT
GATTGATGGGACTGGAAAGGGCTTGGGATTGGATGAATACGATCTTGAGC
CAGCAAGAATGGCGCTTCATCGATTCGGAAACA
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