CX300239

Overview
NameCX300239
Unique NameCX300239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_AMBAR (Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.992e-48
Identity = 89/101 (88.12%), Postives = 96/101 (95.05%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWAQS  FPQ+KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ +LIIGIYDEPMTPGQCNM+VER GDYL++QG
Sbjct:   30 GVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMSLIIGIYDEPMTPGQCNMLVERPGDYLLEQG 130          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF2_SOLLC (Profilin-2 OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.103e-48
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS NFPQ KPEEITGIMNDF  PGTLAPTGLYLGGTKYMVIQGEP AVIRGKKGPGG+TIKKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI+Q L
Sbjct:   30 GTVWAQSANFPQFKPEEITGIMNDFAVPGTLAPTGLYLGGTKYMVIQGEPEAVIRGKKGPGGITIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_CAPAN (Profilin OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.939e-47
Identity = 89/102 (87.25%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS  FPQ KPEEIT IMNDF EPGTLAPTGLYLGGTKYMVIQGE GAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI+Q L
Sbjct:   30 GSVWAQSATFPQFKPEEITAIMNDFAEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKKGPGGITVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.533e-47
Identity = 86/102 (84.31%), Postives = 94/102 (92.16%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS NFPQ KP EI  IM DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNM+VERLGDYL+DQGL
Sbjct:   30 GSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNMVVERLGDYLVDQGL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_ARAHY (Profilin OS=Arachis hypogaea PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.624e-47
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS +FPQ KPEEIT IMNDF EPG+LAPTGLYLGGTKYMVIQGEPGA+I GKKGPGGVTI+KT+ ALIIGIYD+PMTPGQCNMIVERLGDYLID GL
Sbjct:   30 GGVWAQSSHFPQFKPEEITAIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAIIPGKKGPGGVTIEKTNQALIIGIYDKPMTPGQCNMIVERLGDYLIDTGL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_HEVBR (Profilin-1 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.642e-46
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS NFPQ K EEIT IM+DF+EPGTLAPTGL+LGGTKYMVIQGE GAVIRGKKGPGGVT++KT+ ALIIGIYDEPMTPGQCNMIVERLGDYL++QG+
Sbjct:   30 GSVWAQSSNFPQFKSEEITAIMSDFDEPGTLAPTGLHLGGTKYMVIQGEAGAVIRGKKGPGGVTVRKTNQALIIGIYDEPMTPGQCNMIVERLGDYLLEQGM 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF5_MAIZE (Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.800e-46
Identity = 83/101 (82.18%), Postives = 94/101 (93.07%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWAQSENFP+LKPEE+ G++ DF+EPGTLAPTGL++GGTKYMVIQGEPG VIRGKKG GG+TIKKT  +LIIGIYDEPMTPGQCNM+VERLGDYLI+QG
Sbjct:   30 GSVWAQSENFPELKPEEVAGMIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGIYDEPMTPGQCNMVVERLGDYLIEQG 130          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_CHEAL (Profilin OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.657e-46
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS +FPQLKPEE++ IM DFNEPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKGPGGVTIKKT+ ALIIGIY EPMTPGQCNM+VER+GDYL++QG+
Sbjct:   30 GTVWAQSPSFPQLKPEEVSAIMKDFNEPGSLAPTGLHLGGTKYMVIQGEPGDVIRGKKGPGGVTIKKTNQALIIGIYGEPMTPGQCNMVVERIGDYLVEQGM 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_PARJU (Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.776e-46
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS NFPQLKPEE+TGIMNDFNE G LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG T+KKT  A++IGIYDEPMTPGQCN++VERLGDYL++QGL
Sbjct:   31 GSVWAQSANFPQLKPEEVTGIMNDFNEAGFLAPTGLFLGGTKYMVIQGESGAVIRGKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLLEQGL 132          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.776e-46
Identity = 85/102 (83.33%), Postives = 91/102 (89.22%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G +WAQS  FPQ KPEEITGIMNDF EPG+LAPTGLYL G KYMVIQGEPGAVIRGKKG GGVTIKKT  ALI GIY+EPMTPGQCNM+VER+GDYL+DQGL
Sbjct:   30 GSIWAQSAGFPQFKPEEITGIMNDFAEPGSLAPTGLYLAGMKYMVIQGEPGAVIRGKKGSGGVTIKKTGQALIFGIYEEPMTPGQCNMVVERMGDYLVDQGL 131          
The following BLAST results are available for this feature:
BLAST of CX300239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PROF1_AMBAR2.992e-4888.12Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1... [more]
PROF2_SOLLC5.103e-4889.22Profilin-2 OS=Solanum lycopersicum PE=1 SV=1[more]
PROF_CAPAN1.939e-4787.25Profilin OS=Capsicum annuum PE=1 SV=1[more]
PROF_LITCN2.533e-4784.31Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF_ARAHY9.624e-4786.27Profilin OS=Arachis hypogaea PE=1 SV=1[more]
PROF1_HEVBR1.642e-4684.31Profilin-1 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF5_MAIZE2.800e-4682.18Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1[more]
PROF_CHEAL3.657e-4682.35Profilin OS=Chenopodium album PE=1 SV=1[more]
PROF1_PARJU4.776e-4682.35Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1[more]
PROF1_LILLO4.776e-4683.33Profilin-1 OS=Lilium longiflorum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07007G09SK SaltLeaf1 Citrus clementina cDNA clone C07007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300239 ID=CX300239; Name=CX300239; organism=Citrus clementina; type=EST; length=541bp
GGAAAGGTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGA
AATAACTGGTATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAA
CTGGACTGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCA
GGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAA
GACCAGTGCAGCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTG
GGCAGTGCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAG
GGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTG
CCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTC
AAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAG
TTCTTGATATCATCTATTTGTAGTATTGTTATGGGTGTCAAGGTACTTTA
CCAATCACTATTACAGTGGATCCTAATGGATGTGTCAATTT
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