CX300244

Overview
NameCX300244
Unique NameCX300244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NCB2_YEAST (Negative cofactor 2 complex subunit beta OS=Saccharomyces cerevisiae GN=NCB2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYI---EEVYAAYE--QHKLETMDS 249
            K+I E+L  D+   +DA++++I   +EFI ++SS ++E+   E K+TIAPEHV+KALE L + E+I   EE+   ++  Q   ET DS
Sbjct:   17 KMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDS 104
The following BLAST results are available for this feature:
BLAST of CX300244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NCB2_YEAST7.074e-1142.05Negative cofactor 2 complex subunit beta OS=Saccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007H02SK SaltLeaf1 Citrus clementina cDNA clone C07007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300244 ID=CX300244; Name=CX300244; organism=Citrus clementina; type=EST; length=559bp
AAAATTATAAAAGAGATGTTGCCAGCAGATGTACGTGTTGCAAGAGATGC
TCAAGATCTTTTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTTTCCT
CTGAGTCCAATGAAGTTTGCAGCAGGGAGGATAAAAGAACAATTGCTCCC
GAGCATGTACTCAAGGCTTTGGAGGTTCTTGGGTTTGGTGAGTACATCGA
GGAGGTCTATGCTGCATACGAGCAACACAAGCTTGAGACTATGGACTCGT
TGAAAGGTGGCAAATGGAGCAATGGGGCCGAGATGACGGAGGAAGAAGCA
GCGGCTGAGCAGCAGAGAATGTTTGCTGAGGCACGTGCACGAATGAACGG
TGGAGCCGCTGGCCCTCCCAAGCAACCGGACATTAACCCAAGTTTAGAGA
GCTAACTAACTATAGGACTTTTAATTTTCTCCAGCCATAGGCAAGCATCC
TTGACTCTTTCTGTTCTGCCTTTAGTCTCTTATATTATGTACAAAAAGCC
TTTGTGAGTGCAGTAGCCTATGTGGATATGCACTTCCATTTGTACTTTAT
CTTATGGAT
back to top