CX300247

Overview
NameCX300247
Unique NameCX300247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.029e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKL 224
            I+HIGD +EILSNGKYK++LHR  VNK+K R+SW VF EPP + +V  PLP+ V +  PP++  + F  +   KL
Sbjct:  274 IMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIVLQPLPETVSEVEPPRFPPRTFAQHLKHKL 348          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.710e-16
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            ++HIGD +EILSNGKYK++LHR  VNK+K R+SW VF EPP + ++  PLP+ V ++ P  +  + F ++   KL +  Q
Sbjct:  272 VMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQHKLFRKSQ 351          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTV-VGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            I+H+GD +EILSNG+Y +VLHR  VN++  R+SW VF EPP D+V + PLP+LV + +P ++  + FK +   KL K  Q
Sbjct:  290 IVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARFTPRTFKQHLDRKLFKKKQ 369          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.321e-12
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV 140
            I+HIGD IEILSNGKYK++LHR  VNK+K R+SW VF EPP + ++
Sbjct:  274 IMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKII 319          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 209
            +++IGD IEI+SNG YK++ HR  +N DK R+S   F +P   T +GPLP LV  EN  KYK   ++DY
Sbjct:  265 VVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV-KENGVKYKTIDYEDY 332          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.352e-11
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKL 224
            +I++GDQ+E+++NGKYK+VLHR     D TRMS   F  P  D V+ P P LV+ E   K    KF    Y KL
Sbjct:  214 VINLGDQLEVITNGKYKSVLHRVVAQTDGTRMSIASFYNPGNDAVIYPAPALVEKEVEEKEVYPKFVFDDYMKL 287          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.352e-11
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKK-------FKDYSYCKLNK 230
            +++IGDQ+E+++NGKYK+VLHR     D  RMS   F  P +D V+ P P LV+ E   K + KK       F+DY    + K
Sbjct:  218 VVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKEAEEKEEKKKEIYPKFVFQDYMNLYIRK 300          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDE----NPPKYKAKKFKDY 209
            ++++GDQ+E+++NGKYK+V+HR    KD TRMS   F  P  D ++ P P LVD E    N   Y    F DY
Sbjct:  214 VVNLGDQLEVITNGKYKSVMHRVIAQKDGTRMSLASFYNPGNDALIYPAPALVDKEAEEHNKQVYPKFMFDDY 286          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 209
            ++++GDQ+E+++NGKYK+V+HR    KD  RMS   F  P +D V+ P P LV+   +EN   Y    F DY
Sbjct:  214 VVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.753e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVD-DENPPKYKAKKFKDYSYCKL 224
            +I+IGDQ+E+++NGKYK+V+HR     D  RMS   F  P +D V+ P P LVD +E+  K    KF    Y KL
Sbjct:  214 VINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSIASFYNPGSDAVMYPAPALVDKEEDQQKQVYPKFVFEDYMKL 288          
The following BLAST results are available for this feature:
BLAST of CX300247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
LDOX_PERFR2.029e-1652.00Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_MALDO7.710e-1646.25Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_MAIZE1.315e-1548.75Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
LDOX_VITVI2.321e-1265.22Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
NCS1_COPJA3.960e-1249.28S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO_DIOKA3.352e-1145.951-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO1_DORSP3.352e-1140.961-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO2_SOLLC4.378e-1143.841-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO1_PETHY4.378e-1143.061-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO_ACTDE9.753e-1145.331-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]

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Properties
Property NameValue
Genbank descriptionC07007H05SK SaltLeaf1 Citrus clementina cDNA clone C07007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300247 ID=CX300247; Name=CX300247; organism=Citrus clementina; type=EST; length=416bp
TCATCATCCACATCGGGGACCAGATCGAGATTCTGAGCAATGGCAAGTAC
AAAGCCGTGCTGCATAGAACCACTGTTAACAAGGACAAGACGAGAATGTC
GTGGCCAGTTTTCTTGGAGCCACCTGCGGATACGGTGGTGGGTCCCCTTC
CTCAGCTGGTTGACGATGAAAATCCTCCAAAGTACAAGGCCAAGAAGTTC
AAGGATTACAGTTACTGTAAACTTAACAAACTTCCTCAGTAGATTTTTCA
TTATGAGAAAAATAACACCAGTATCCGCTGGCCGCTCATGTTTGATCTCG
TCACTGTACGTTAGCGATGCTTGTTTGTTGTTGCGATCTTGTTTCTGAAA
TGTAATCGCGGGTGTTAGCAATAATAAATAATCCTTTCATTTTATTTAAA
AAAAAAAAAAAAAAAA
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