CX300252
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHELP (Biosynthetic arginine decarboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=speA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.788e-12 Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320 + VN S+F S+PD W I Q+FP++P+ LD++P R V+ D+TCDSDG +D+++ G T+LP+ Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKKPERRAVMLDITCDSDGTVDQYVDGQGIETTLPV 528
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHEWM (Biosynthetic arginine decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.336e-12 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320 + VN S+F S+PD W I Q+FPI+P+ LD+ P R V+ D+TCDSDG ID+++ G T+LP+ Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTLPV 528
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHEHH (Biosynthetic arginine decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.336e-12 Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG ID+++ G T+LP+ Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTIDQYVDGQGIETTLPV 528
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_MARAV (Biosynthetic arginine decarboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=speA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.336e-12 Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3 Query: 141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326 VN S+F S+PD W I Q+FP++PI+ L+ R V+ D+TCDSDG+ID+++ G T+LPL E Sbjct: 466 VNFSLFQSLPDVWGIDQIFPVMPINGLNRSLNRRAVIQDITCDSDGRIDQYVDGQGIETTLPLPE 530
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHESH (Biosynthetic arginine decarboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=speA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302 + VN S+F S+PD W I Q+FPI+P+ LD+ P R V+ D+TCDSDG ID+++ G Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDG 519
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPA (Biosynthetic arginine decarboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=speA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12 Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTVDQYVEGQGIETTLPV 528
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_PASMU (Biosynthetic arginine decarboxylase OS=Pasteurella multocida GN=speA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12 Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 3 Query: 33 QFKDGTLGIEQLATVDGLCDFVAKEIGA--SDPVRTY---------------HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPL 320 Q+ G L +EQ A + L + E+G ++ R++ +VN S+F S+PD W I QLFP+ PI +L++ R VL D+TCDSDG ID +I G T++P+ Sbjct: 420 QYNVGLLNLEQRAWAEQLYLNICHEVGQLFNEKHRSHRTIIDELQERFADKLYVNFSLFQSLPDAWGIDQLFPVCPISNLNQPVSRRAVLLDITCDSDGTIDHYIDGDGITTTMPM 535
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ALHEH (Biosynthetic arginine decarboxylase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 3 Query: 144 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPL 320 N S+F S+PD WAI Q+FP++P+ LDE P R VL DLTCDSDG I ++ G ++LPL Sbjct: 459 NFSLFQSMPDVWAIDQIFPVLPLQRLDEPPASRAVLQDLTCDSDGCIRGYVDRDGVESTLPL 520
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHESW (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain W3-18-1) GN=speA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12 Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV 528
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHESR (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain MR-7) GN=speA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12 Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3 Query: 135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320 + VN S+F S+PD W I Q+FP++P+ LD+ P R V+ D+TCDSDG +D+++ G T+LP+ Sbjct: 464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV 528 The following BLAST results are available for this feature:
BLAST of CX300252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300252 ID=CX300252; Name=CX300252; organism=Citrus clementina; type=EST; length=332bpback to top |