CX300252

Overview
NameCX300252
Unique NameCX300252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length332
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHELP (Biosynthetic arginine decarboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=speA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.788e-12
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            + VN S+F S+PD W I Q+FP++P+  LD++P  R V+ D+TCDSDG +D+++ G    T+LP+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKKPERRAVMLDITCDSDGTVDQYVDGQGIETTLPV 528          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHEWM (Biosynthetic arginine decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.336e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            + VN S+F S+PD W I Q+FPI+P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTLPV 528          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHEHH (Biosynthetic arginine decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.336e-12
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTIDQYVDGQGIETTLPV 528          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_MARAV (Biosynthetic arginine decarboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=speA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.336e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  141 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHE 326
            VN S+F S+PD W I Q+FP++PI+ L+     R V+ D+TCDSDG+ID+++ G    T+LPL E
Sbjct:  466 VNFSLFQSLPDVWGIDQIFPVMPINGLNRSLNRRAVIQDITCDSDGRIDQYVDGQGIETTLPLPE 530          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHESH (Biosynthetic arginine decarboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=speA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG 302
            + VN S+F S+PD W I Q+FPI+P+  LD+ P  R V+ D+TCDSDG ID+++ G
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDG 519          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPA (Biosynthetic arginine decarboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=speA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTVDQYVEGQGIETTLPV 528          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_PASMU (Biosynthetic arginine decarboxylase OS=Pasteurella multocida GN=speA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 3
Query:   33 QFKDGTLGIEQLATVDGLCDFVAKEIGA--SDPVRTY---------------HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPL 320
            Q+  G L +EQ A  + L   +  E+G   ++  R++               +VN S+F S+PD W I QLFP+ PI +L++    R VL D+TCDSDG ID +I G    T++P+
Sbjct:  420 QYNVGLLNLEQRAWAEQLYLNICHEVGQLFNEKHRSHRTIIDELQERFADKLYVNFSLFQSLPDAWGIDQLFPVCPISNLNQPVSRRAVLLDITCDSDGTIDHYIDGDGITTTMPM 535          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ALHEH (Biosynthetic arginine decarboxylase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  144 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPL 320
            N S+F S+PD WAI Q+FP++P+  LDE P  R VL DLTCDSDG I  ++   G  ++LPL
Sbjct:  459 NFSLFQSMPDVWAIDQIFPVLPLQRLDEPPASRAVLQDLTCDSDGCIRGYVDRDGVESTLPL 520          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHESW (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain W3-18-1) GN=speA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV 528          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_SHESR (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain MR-7) GN=speA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  135 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPL 320
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV 528          
The following BLAST results are available for this feature:
BLAST of CX300252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SPEA_SHELP1.788e-1246.15Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEWM2.336e-1249.23Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEHH2.336e-1247.69Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_MARAV2.336e-1249.23Biosynthetic arginine decarboxylase OS=Marinobacte... [more]
SPEA_SHESH3.984e-1251.79Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEPA3.984e-1246.15Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_PASMU3.984e-1236.21Biosynthetic arginine decarboxylase OS=Pasteurella... [more]
SPEA_ALHEH5.203e-1253.23Biosynthetic arginine decarboxylase OS=Alkalilimni... [more]
SPEA_SHESW6.796e-1246.15Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHESR6.796e-1246.15Biosynthetic arginine decarboxylase OS=Shewanella ... [more]

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Properties
Property NameValue
Genbank descriptionC07007H10SK SaltLeaf1 Citrus clementina cDNA clone C07007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300252 ID=CX300252; Name=CX300252; organism=Citrus clementina; type=EST; length=332bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTT
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