CX300259

Overview
NameCX300259
Unique NameCX300259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.747e-29
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            EAVWFK G+ +     L+Y G    I+   + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ F  LKVKE+K GRLAM +M GFF+QA VTG+GP+ENLA H++DP  NN
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.747e-29
Identity = 72/127 (56.69%), Postives = 86/127 (67.72%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L PGG FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  128 EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.588e-29
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            EAVW K G+ +     L+Y G    ++   + A+ A +++L+G  E YR+  G    + D L+PGG FDPLGLA+DP+ FA LKVKE KNGRLAMF+M GFF+QA VTG+GP+ENLA HL DP  NN
Sbjct:  129 EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.686e-29
Identity = 66/127 (51.97%), Postives = 86/127 (67.72%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            EA WFK G+ +     L+Y G    ++   L+     ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+ P  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E+LA H++DP  NN
Sbjct:  128 EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.121e-29
Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:   12 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.038e-28
Identity = 65/127 (51.18%), Postives = 87/127 (68.50%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            E VWFK G+ +     L++ G    ++   + A+ A ++VL+G  E Y +  G   ++ D L+ GG FDPLGL  DP++FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  126 EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.572e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  111 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.572e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  111 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.572e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  111 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX300259 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.358e-27
Identity = 70/129 (54.26%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 374
            E VWFK G+ +     L+Y G    +    + AV+  +++L+G  E +RI NGLD     + L+PGG  FDPLGLA DP  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL DP ANN
Sbjct:  129 EPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
The following BLAST results are available for this feature:
BLAST of CX300259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_MAIZE2.747e-2952.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.747e-2956.69Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_PETSP3.588e-2952.76Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT4.686e-2951.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY6.121e-2955.91Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB48_MAIZE3.038e-2851.18Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2D_SOLLC2.572e-2765.56Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.572e-2765.56Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.572e-2765.56Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_HORVU3.358e-2754.26Chlorophyll a-b binding protein of LHCII type III,... [more]

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Properties
Property NameValue
Genbank descriptionC07008A08SK NTLeaf1 Citrus clementina cDNA clone C07008A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300259 ID=CX300259; Name=CX300259; organism=Citrus clementina; type=EST; length=386bp
GTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGA
AACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGC
TGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCA
CCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGAC
CCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAA
GGAGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGTTTCTTTC
TCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTTGCTAAACAT
CTCAGTGATCCTTTTGCCAACAACTTGCTTACCGTG
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