CX300260

Overview
NameCX300260
Unique NameCX300260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G    I    + A+ A +++L+   E Y +  G    + D ++PGG FDPLGLA DPD FA +KV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  140 EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 255          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAV-IAEIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+  A++VL+   E Y +  G   E  DK++PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y +  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y +  G    +ED ++PGG FDPLGLA DP+ FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFAEGGLDYLG-NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y +  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  128 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y I  G    + D L+PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y +  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E Y I  G    + D L+PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  123 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 238          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E Y I  G    + D L+PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y I  G    + D L+PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2A_PYRPY1.596e-2149.14Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB26_PETSP1.596e-2150.86Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB24_TOBAC1.596e-2149.57Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_POLMU1.596e-2147.86Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_TOBAC1.596e-2149.57Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC2.084e-2150.43Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC2.084e-2148.72Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ2.084e-2150.86Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ2.084e-2150.86Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_SPIOL2.722e-2149.57Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07008A09SK NTLeaf1 Citrus clementina cDNA clone C07008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bp
GTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGA
CACCCATTGAACTACTTCGGACTGAACATCCCACTCAACCTTGTTTTTGC
TGTCATTGCTGAGATTGTTCTTGTAAGTGGCGCTGAATATTATACAATCA
CCCACGGATTGCATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGAC
CCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGTA
GGAAATCAAGAATGGAACACTTGCAATGTTTGCCATGCTTGAGCTCTTTC
TCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTT
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