CX300260

Overview
NameCX300260
Unique NameCX300260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E Y +  G   E  DK++PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:   99 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 214          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y +  G    + D L+PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.556e-21
Identity = 61/119 (51.26%), Postives = 77/119 (64.71%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFA--VIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+   E Y +  G   E  DK++PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.556e-21
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y +  G   E  D L+PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  128 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.556e-21
Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + AV A ++VL+   E Y +  G   E  DK++PGG FDPLGLA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.556e-21
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLHL---EDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y +     L   ED L+PGG FDPLGLA DP+ FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  128 EAVWFKAGSQIFSDGGLDYLG-NPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.556e-21
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E Y I  G    + D L+PGG FDPLGLA DP+ FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  124 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 239          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.556e-21
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLHL---EDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y +     L   ED L+PGG FDPLGLA DP+ FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  128 EAVWFKAGSQIFSDGGLDYLG-NPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.644e-21
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y I  G    + D L+PGG FDPLGLA DP+ FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  130 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.644e-21
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y I  G    + D L+PGG FDPLGLA DP+ FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  131 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 246          
The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB25_SOLLC2.722e-2150.86Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB25_PETSP2.722e-2149.57Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_SOLLC3.556e-2151.26Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PETSP3.556e-2150.43Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_TOBAC3.556e-2151.72Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_ARATH3.556e-2148.31Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_MAIZE3.556e-2150.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ARATH3.556e-2148.31Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB28_PEA4.644e-2148.72Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA4.644e-2148.72Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC07008A09SK NTLeaf1 Citrus clementina cDNA clone C07008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bp
GTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGA
CACCCATTGAACTACTTCGGACTGAACATCCCACTCAACCTTGTTTTTGC
TGTCATTGCTGAGATTGTTCTTGTAAGTGGCGCTGAATATTATACAATCA
CCCACGGATTGCATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGAC
CCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGTA
GGAAATCAAGAATGGAACACTTGCAATGTTTGCCATGCTTGAGCTCTTTC
TCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTT
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