CX300260

Overview
NameCX300260
Unique NameCX300260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.351e-20
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y +  G   E  D L+PGG FDPLGLA DP+ FA L+V EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  128 EAVWFKAGSQIFKEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.351e-20
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E Y +  G   E  D L+PGG FDPLGLA DPD FA LKV E+KNG LAMF+M   F+QA VTG+GP++NL
Sbjct:  127 EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.765e-20
Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            E VWFK GA +     L+Y G   L    N+V  +  ++VL+   E Y +  G   E  D L+PG  FDPLGLA DPD FA LKV EIKNG LAMF+    F+QA VTG+GP++NL
Sbjct:  118 EPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNL 233          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.765e-20
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E Y +  G    + D L+PGG FDPLGLA DP+ FA +KV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.305e-20
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y +       + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EAVWFKGGSQIFSQGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.305e-20
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G   L    +++     +++L+   E Y +  G    + D L+PGG FDPLGLA+DP++ A LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  126 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 241          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.010e-20
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A +++L+   E Y I  G    + D ++PGG FDPLGLA DP+  A LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  118 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 233          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.931e-20
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L Y G N  L    +++A    ++VL+   E Y +  G    + D L+PGG FDPLGLA D + FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  126 EAVWFKKGSQIFSEGGLQYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.134e-20
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EA WFK G+ +     L+Y G    I    + A+ A +++L+   E Y I  G    + D ++PGG FDPL LA DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  107 EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 222          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.144e-19
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLH--LEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVW K G+ +     L+Y G N  L    +++A    +++L+   E Y +  G    + D L+PGG FDPLGLA+DP+ FA LKV E KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EAVWLKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENL 244          
The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_PETSP1.351e-2049.57Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB215_PEA1.351e-2050.00Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_CHLMO1.765e-2049.14Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB29_MAIZE1.765e-2048.28Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_NICPL2.305e-2048.72Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_APIGR2.305e-2045.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN3.010e-2047.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_HORVU3.931e-2048.72Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN5.134e-2047.41Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PETSP1.144e-1947.01Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC07008A09SK NTLeaf1 Citrus clementina cDNA clone C07008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bp
GTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGA
CACCCATTGAACTACTTCGGACTGAACATCCCACTCAACCTTGTTTTTGC
TGTCATTGCTGAGATTGTTCTTGTAAGTGGCGCTGAATATTATACAATCA
CCCACGGATTGCATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGAC
CCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGTA
GGAAATCAAGAATGGAACACTTGCAATGTTTGCCATGCTTGAGCTCTTTC
TCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTT
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