CX300260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.351e-20 Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G N L +++A ++VL+ E Y + G E D L+PGG FDPLGLA DP+ FA L+V EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 128 EAVWFKAGSQIFKEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.351e-20 Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G I + A+ A ++VL+ E Y + G E D L+PGG FDPLGLA DPD FA LKV E+KNG LAMF+M F+QA VTG+GP++NL Sbjct: 127 EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNL 242
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.765e-20 Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 E VWFK GA + L+Y G L N+V + ++VL+ E Y + G E D L+PG FDPLGLA DPD FA LKV EIKNG LAMF+ F+QA VTG+GP++NL Sbjct: 118 EPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNL 233
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.765e-20 Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G I + A+ A ++VL+ E Y + G + D L+PGG FDPLGLA DP+ FA +KV E+KNG LAMF+M F+QA VTG+GP+ENL Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.305e-20 Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G N L +++A ++VL+ E Y + + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 129 EAVWFKGGSQIFSQGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.305e-20 Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G L +++ +++L+ E Y + G + D L+PGG FDPLGLA+DP++ A LKV E+KNG LAMF+M F+QA VTG+GP+ENL Sbjct: 126 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.010e-20 Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G I + A+ A +++L+ E Y I G + D ++PGG FDPLGLA DP+ A LKV E+KNG LAMF+M F+QA VTG+GP+ENL Sbjct: 118 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 233
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.931e-20 Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L Y G N L +++A ++VL+ E Y + G + D L+PGG FDPLGLA D + FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 126 EAVWFKKGSQIFSEGGLQYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.134e-20 Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EA WFK G+ + L+Y G I + A+ A +++L+ E Y I G + D ++PGG FDPL LA DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 107 EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 222
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.144e-19 Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLH--LEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVW K G+ + L+Y G N L +++A +++L+ E Y + G + D L+PGG FDPLGLA+DP+ FA LKV E KNG LAMF+M F+QA VTG+GP+ENL Sbjct: 129 EAVWLKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENL 244 The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bpback to top |