CX300260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.494e-19 Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G N L +++A +++L+ E Y I G + D L+PGG FDPLGLA+ P+ FA LKV E+KNG LAMF+M F+ A VTG+GP+ENL Sbjct: 90 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENL 205
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19 Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G I + A+ A ++VL+ E Y + G E D L PGG FDPLGLA DP+ A LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 128 EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.548e-19 Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G I + A+ A ++VL+ E Y I G + D L+PGG FDPLGLA DP+ F LKV E+K G LAM +M F+QA VTG+GP+ENL Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENL 242
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.548e-19 Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EA WFK G+ + L+Y G L +L+ ++VL+ E Y I G + D L+PGG FDPLGLA+ P FA LKV EIKNG LAMF+M F+QA VTG+GP+E+L Sbjct: 128 EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDL 243
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.346e-19 Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G I + A+ A ++VL+ E Y + G E D L+PG FDPLGLA DP+ A LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 12 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 127
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.265e-18 Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 E VWFK G+ + L++ G N L +++A ++VL+ E Y + G + D L+ GG FDPLGL DP++FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 126 EGVWFKAGSQIFSEGGLSHPG-NPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 241
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 ++VL+ E Y I G + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 ++VL+ E Y I G + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 ++VL+ E Y I G + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 ++VL+ E Y I G + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242 The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bpback to top |