CX300260

Overview
NameCX300260
Unique NameCX300260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.494e-19
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    +++L+   E Y I  G    + D L+PGG FDPLGLA+ P+ FA LKV E+KNG LAMF+M   F+ A VTG+GP+ENL
Sbjct:   90 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENL 205          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G    I    + A+ A ++VL+   E Y +  G   E  D L PGG FDPLGLA DP+  A LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  128 EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.548e-19
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E Y I  G    + D L+PGG FDPLGLA DP+ F  LKV E+K G LAM +M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.548e-19
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EA WFK G+ +     L+Y G   L    +L+     ++VL+   E Y I  G    + D L+PGG FDPLGLA+ P  FA LKV EIKNG LAMF+M   F+QA VTG+GP+E+L
Sbjct:  128 EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDL 243          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.346e-19
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G    I    + A+ A ++VL+   E Y +  G   E  D L+PG  FDPLGLA DP+  A LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:   12 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 127          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.265e-18
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            E VWFK G+ +     L++ G N  L    +++A    ++VL+   E Y +  G    + D L+ GG FDPLGL  DP++FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  126 EGVWFKAGSQIFSEGGLSHPG-NPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 241          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            ++VL+   E Y I  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            ++VL+   E Y I  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            ++VL+   E Y I  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            ++VL+   E Y I  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_PEA1.494e-1947.01Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_PINTH1.951e-1950.86Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_MAIZE2.548e-1947.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT2.548e-1947.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY4.346e-1950.00Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB48_MAIZE1.265e-1846.15Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC1.071e-1758.23Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.071e-1758.23Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.071e-1758.23Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.071e-1758.23Chlorophyll a-b binding protein 1C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07008A09SK NTLeaf1 Citrus clementina cDNA clone C07008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bp
GTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGA
CACCCATTGAACTACTTCGGACTGAACATCCCACTCAACCTTGTTTTTGC
TGTCATTGCTGAGATTGTTCTTGTAAGTGGCGCTGAATATTATACAATCA
CCCACGGATTGCATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGAC
CCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGTA
GGAAATCAAGAATGGAACACTTGCAATGTTTGCCATGCTTGAGCTCTTTC
TCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTT
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