CX300260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 ++VL+ E Y I G + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17 Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITH--GLHLEDKLHPGGP-FDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 E VWFK G+ + L+Y G + + AV+ ++VL+ E + I G+ + L+PGG FDPLGLA DP FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 126 EPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.068e-17 Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIAEIVLVSG-AEYYTIT--HGLHLEDKLHPGGP-FDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 E VWFK G+ + L+Y G + + AV+ VL+ G E + I G+ + L+PGG FDPLGLA DP FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 129 EPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.637e-16 Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 3 Query: 171 DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVEN 338 D+L+PGGPFDPLGLA DPD F LKV EIKNG LAM ML + QA VTGEGPVEN Sbjct: 43 DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVEN 98
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.973e-15 Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 111 EIVLVSGAEYYTITHGLHL---EDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 +++L+ E Y + L ED L+PGG FDPL DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 101
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15 Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G N L +++A +++L+ E Y I G + D L+PG FD LGLA+D + FA LKV E+KNG LAMF+M F+QA V+ + +ENL Sbjct: 131 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENL 245
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12 Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 3 Query: 60 NYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 +Y G +P +L + E+++V E+ + L E +++PGG FDPLGLA DP++ LK+ EIK+ LAM A L LQA TG+GPV L Sbjct: 179 SYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12 Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 3 Query: 18 WFKTGALLLDGHPLNYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPFDPLGLAKDPDQFAL-LKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 W + G + LDG +Y GL++P ++ + E++LV GAE+Y + + E + +PGG FDPL LA + ++ A LK EIK+ LAM + +QA TGEG + +L Sbjct: 162 WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 3 Query: 18 WFKTGAL-LLDGHPLNYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPF-DPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVEN 338 W G + L+DG +Y G +P ++ + E++++ E+ L E +L+PGG F DPLGLA DP++ A L++ EIK+ LAM A L +QA TG+GP+ N Sbjct: 165 WQDAGKVELVDGS--SYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNN 270 The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bpback to top |