CX300260

Overview
NameCX300260
Unique NameCX300260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  111 EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            ++VL+   E Y I  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITH--GLHLEDKLHPGGP-FDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            E VWFK G+ +     L+Y G    +    + AV+  ++VL+   E + I    G+   + L+PGG  FDPLGLA DP  FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  126 EPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.068e-17
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIAEIVLVSG-AEYYTIT--HGLHLEDKLHPGGP-FDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            E VWFK G+ +     L+Y G    +    + AV+   VL+ G  E + I    G+   + L+PGG  FDPLGLA DP  FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.637e-16
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  171 DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVEN 338
            D+L+PGGPFDPLGLA DPD F  LKV EIKNG LAM  ML  + QA VTGEGPVEN
Sbjct:   43 DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVEN 98          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.973e-15
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  111 EIVLVSGAEYYTITHGLHL---EDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            +++L+   E Y +     L   ED L+PGG FDPL    DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 101          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.483e-15
Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G N  L    +++A    +++L+   E Y I  G    + D L+PG  FD LGLA+D + FA LKV E+KNG LAMF+M   F+QA V+ +  +ENL
Sbjct:  131 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENL 245          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 3
Query:   60 NYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            +Y G  +P +L   +  E+++V   E+   +  L  E +++PGG FDPLGLA DP++   LK+ EIK+  LAM A L   LQA  TG+GPV  L
Sbjct:  179 SYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 3
Query:   18 WFKTGALLLDGHPLNYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPFDPLGLAKDPDQFAL-LKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            W + G + LDG   +Y GL++P ++   +  E++LV GAE+Y  +   + E + +PGG FDPL LA + ++ A  LK  EIK+  LAM +     +QA  TGEG + +L
Sbjct:  162 WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.554e-11
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 3
Query:   18 WFKTGAL-LLDGHPLNYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPF-DPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVEN 338
            W   G + L+DG   +Y G  +P ++   +  E++++   E+      L  E +L+PGG F DPLGLA DP++ A L++ EIK+  LAM A L   +QA  TG+GP+ N
Sbjct:  165 WQDAGKVELVDGS--SYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNN 270          
The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2A_SOLLC1.071e-1758.23Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOLLC1.398e-1747.01Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU4.068e-1747.86Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_EUGGR2.637e-1673.21Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_RAPSA4.973e-1552.50Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2_MALDO8.483e-1543.59Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB4C_ARATH2.310e-1242.55Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE3.017e-1238.53Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4A_ARATH2.554e-1138.53Chlorophyll a-b binding protein CP29.1, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionC07008A09SK NTLeaf1 Citrus clementina cDNA clone C07008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bp
GTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGA
CACCCATTGAACTACTTCGGACTGAACATCCCACTCAACCTTGTTTTTGC
TGTCATTGCTGAGATTGTTCTTGTAAGTGGCGCTGAATATTATACAATCA
CCCACGGATTGCATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGAC
CCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGTA
GGAAATCAAGAATGGAACACTTGCAATGTTTGCCATGCTTGAGCTCTTTC
TCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTT
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