CX300280

Overview
NameCX300280
Unique NameCX300280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.423e-40
Identity = 88/133 (66.17%), Postives = 101/133 (75.94%), Query Frame = 2
Query:   47 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVK
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 137          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.423e-40
Identity = 82/127 (64.57%), Postives = 93/127 (73.23%), Query Frame = 2
Query:   50 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            AT A+  S FAG+      +       +   G+ TMR+T  K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVK
Sbjct:    4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVK 126          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.471e-40
Identity = 88/133 (66.17%), Postives = 101/133 (75.94%), Query Frame = 2
Query:   47 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVK
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 137          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.471e-40
Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 2
Query:   50 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            ++ A+      G+     +N   +++G   G R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVK
Sbjct:    4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 127          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.471e-40
Identity = 84/127 (66.14%), Postives = 98/127 (77.17%), Query Frame = 2
Query:   50 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            A++    S FAG+ A++ S       G    G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVK
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.471e-40
Identity = 84/127 (66.14%), Postives = 98/127 (77.17%), Query Frame = 2
Query:   50 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            A++    S FAG+ A++ S       G    G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVK
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.960e-40
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 2
Query:  143 GRITMRRTVKSTPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVK
Sbjct:   31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.960e-40
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 2
Query:   50 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            AT A+   +FAG+ A++ S       G    G+ TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVK
Sbjct:    4 ATMALSSPSFAGK-AVKFSPSSSEITG---NGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.301e-39
Identity = 84/127 (66.14%), Postives = 96/127 (75.59%), Query Frame = 2
Query:   50 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            +T A+   +FAG  A++ S       G    G+  MR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVK
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126          
BLAST of CX300280 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 83/128 (64.84%), Postives = 95/128 (74.22%), Query Frame = 2
Query:   50 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 418
            +T A+  +AFAG+     S+ F          R+TMR+T  K+ P     S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVK
Sbjct:    4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 124          
The following BLAST results are available for this feature:
BLAST of CX300280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB2A_PYRPY3.423e-4066.17Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PETSP3.423e-4064.57Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2A_PINSY4.471e-4066.17Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA4.471e-4062.20Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_NICPL4.471e-4066.14Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_TOBAC4.471e-4066.14Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2A_SPIOL9.960e-4078.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_PETSP9.960e-4066.93Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB27_TOBAC1.301e-3966.14Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB29_MAIZE1.699e-3964.84Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07008C07SK NTLeaf1 Citrus clementina cDNA clone C07008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300280 ID=CX300280; Name=CX300280; organism=Citrus clementina; type=EST; length=419bp
AAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGG
CAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGG
CAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTAT
CACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGGTACGGCC
CAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATAC
TTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATC
AGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACA
GCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTC
TCCAAGAATGGAGTGAAGT
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