CX300332

Overview
NameCX300332
Unique NameCX300332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: COBW_PSEAE (Protein cobW OS=Pseudomonas aeruginosa GN=cobW PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.102e-17
Identity = 49/116 (42.24%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEW----VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITVVDA 333
            +L+   G+RIAVI+NEFGE +G++  ++ +   G   EE      ELANGC+CCTV+      + +LV R+  LD IL+ET+GLA P PL     W   ++ +A  +D++ITVVD+
Sbjct:   52 MLDNAEGRRIAVIVNEFGE-LGIDGEILKQCSIGCSEEEAQGRVFELANGCLCCTVQEEFFPVMRELVARRGDLDQILIETSGLALPKPLVQAFQW--PEIRNACTVDAVITVVDS 164          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: Y4527_DICDI (COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 43/130 (33.08%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGAL--------IEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD-----DQLESAVRLDSIITVVDAKNLLFQ 351
            ILN  HG +IAVI+N+  E + ++  +I E E            +E  VE++NGCICCT++  L+  + +L + K R D++++E++G++ P P+A     +     + L+   +LD+++TVVD    L Q
Sbjct:   63 ILNSNHGLKIAVIVNDMSE-VNIDSKLILENEFKITRTKATEKQVEAVVEMSNGCICCTMREDLLVEVTKLAKEK-RFDYLIIESSGISEPLPIAETFTFEIDGSIENLKDYTKLDTMVTVVDCSTWLEQ 190          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: YCIC_BACSU (Putative metal chaperone yciC OS=Bacillus subtilis GN=yciC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14
Identity = 43/118 (36.44%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGA--LIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ----LESAVRLDSIITVVDA 333
            IL  + G +IAVI+N+  E + ++  ++ + EGG     E+ VE++NGCICCT++  L+  +E+L  +  R D+I++E+TG++ P P+A    ++D++    L    +LD+++TVVDA
Sbjct:   24 ILQNREGLKIAVIVNDMSE-VNIDAGLVKQ-EGGLSRTDEKLVEMSNGCICCTLREDLLIEVEKLA-KDGRFDYIVIESTGISEPIPVAQTFSYIDEEMGIDLTKFCQLDTMVTVVDA 138          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: P47K_PSECL (47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13
Identity = 42/119 (35.29%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGE-----EIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ---LESAVRLDSIITVVD 330
            IL  + G R+AVI+N+  E     E       ++ G      +E +E++NGCICCT++  L++ +  L  R++R D++L+E+TG++ P P+A    +LD +   L    RLD+++TVVD
Sbjct:   30 ILRNRQGLRVAVIVNDMSEVNLDAESVQRDVSLHRGR-----DELIEMSNGCICCTLRADLLEQISDLA-RQQRFDYLLIESTGISEPMPVAETFAFLDTEGFSLSELARLDTLVTVVD 142          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: YJIA_ECOLI (Uncharacterized GTP-binding protein yjiA OS=Escherichia coli (strain K12) GN=yjiA PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDA 333
            ILN +HG +IAVI NEFGE + V+  +I  G+    I+    L NGCICC+  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L     LD +I +VDA
Sbjct:   24 ILNEQHGYKIAVIENEFGE-VSVDDQLI--GDRATQIKT---LTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDA 132          
The following BLAST results are available for this feature:
BLAST of CX300332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COBW_PSEAE4.102e-1742.24Protein cobW OS=Pseudomonas aeruginosa GN=cobW PE=... [more]
Y4527_DICDI1.906e-1433.08COBW domain-containing protein DDB_G0274527 OS=Dic... [more]
YCIC_BACSU7.241e-1436.44Putative metal chaperone yciC OS=Bacillus subtilis... [more]
P47K_PSECL2.107e-1335.2947 kDa protein OS=Pseudomonas chlororaphis PE=3 SV... [more]
YJIA_ECOLI6.778e-1237.39Uncharacterized GTP-binding protein yjiA OS=Escher... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07008H02SK NTLeaf1 Citrus clementina cDNA clone C07008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300332 ID=CX300332; Name=CX300332; organism=Citrus clementina; type=EST; length=362bp
ATCTTGAATGGGAAACATGGAAAGAGAATTGCTGTCATCTTGAATGAGTT
TGGTGAAGAGATTGGAGTTGAGAGAGCAATGATAAATGAAGGAGAAGGAG
GTGCACTAATTGAAGAGTGGGTGGAGTTGGCAAATGGGTGCATTTGTTGC
ACTGTTAAACATAGTTTAGTTCAAGCACTCGAGCAACTTGTACAGAGAAA
AGAAAGACTTGATCATATTTTGCTCGAGACCACTGGGTTAGCAAATCCTG
CTCCTCTGGCATCTGTTCTTTGGTTGGATGACCAGCTGGAATCAGCTGTC
AGGCTTGATTCTATTATCACTGTTGTGGATGCCAAAAATCTTCTTTTCCA
GATTGATAAGTA
back to top