CX300333

Overview
NameCX300333
Unique NameCX300333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length286
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig410 contig Ccv1_Contig410:47..332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   63 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKK-LPNDLFLKGDVDELKSVA 281
            AAEEGQVIGCHT + W  QL K+ E+ +L+ +DFTASWC PCR IAP   +LAKK + + +F K DVDEL+SVA
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVA 75          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.539e-19
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 3
Query:   72 EGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            EG V  CH+ E W  +LQ++ +TK+LV VDFTA+WCGPCR I P   EL+KK P   FLK DVDEL+ VA
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVA 72          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   63 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKK-LPNDLFLKGDVDELKSVA 281
            AAEEGQVIGCH ++ W  QL  + ++ +L+ +DFTASWC PCR IAP  A+LAKK + + +F K DVDEL++VA
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVA 75          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.253e-18
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   57 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+ +DFTA WC PCRFIAP   ELAKK  + +F K DVDEL +VA
Sbjct:    1 MAATAELIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVA 79          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.253e-18
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   57 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+ +DFTA WC PCRFIAP   ELAKK  + +F K DVDEL +VA
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVA 79          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.253e-18
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   57 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+ +DFTA WC PCRFIAP   ELAKK  + +F K DVDEL +VA
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVA 79          
The following BLAST results are available for this feature:
BLAST of CX300333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRXH4_ARATH1.140e-1960.81Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA2.539e-1958.57Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH2_BRANA1.260e-1856.76Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_BRARA6.253e-1855.70Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL6.253e-1855.70Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA6.253e-1855.70Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC07008H04SK NTLeaf1 Citrus clementina cDNA clone C07008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300333 ID=CX300333; Name=CX300333; organism=Citrus clementina; type=EST; length=286bp
GAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAA
GCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGT
TGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGG
TTGGTGTTGATTTCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCT
CCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGATCTGTTTCTGAA
GGGTGATGTGGATGAACTGAAGAGTGTTGCCACTGA
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