CX300334

Overview
NameCX300334
Unique NameCX300334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig614 contig Ccv1_Contig614:344..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.222e-30
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWA+ATNFVPGK
Sbjct:  199 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.202e-30
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHI DPVANNAWAYATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.228e-29
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  141 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.228e-29
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  190 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.095e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDPD FA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  213 ADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.095e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  196 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.095e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.737e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  204 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.737e-29
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 210
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPG
Sbjct:  197 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.574e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  209 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
The following BLAST results are available for this feature:
BLAST of CX300334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_LEMGI4.222e-3092.42Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC7.202e-3092.42Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_CUCSA1.228e-2990.91Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA1.228e-2990.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY2.095e-2989.39Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_ORYSJ2.095e-2989.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ2.095e-2989.39Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PEA2.737e-2989.39Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_MAIZE2.737e-2992.31Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY3.574e-2989.39Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionC07008H05SK NTLeaf1 Citrus clementina cDNA clone C07008H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300334 ID=CX300334; Name=CX300334; organism=Citrus clementina; type=EST; length=389bp
CCCCGGGCTGCAGGGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGT
CAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCT
TTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGAC
CACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTT
TGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCT
GTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATG
GACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGA
TCTTTTATTTCCATCAAAAAAAAAAAAAAAAACTCGAGG
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