CX300334

Overview
NameCX300334
Unique NameCX300334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig614 contig Ccv1_Contig614:344..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.097e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A+PV NNAWAYATNFVPGK
Sbjct:  180 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.963e-29
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A PV NNAWAYATNFVPGK
Sbjct:  198 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.358e-28
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:   51 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.358e-28
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.358e-28
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  202 ATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.358e-28
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  201 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.358e-28
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            A DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  202 ATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
The following BLAST results are available for this feature:
BLAST of CX300334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB22_TOBAC6.097e-2987.88Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_SOYBN6.097e-2987.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_SOYBN7.963e-2989.39Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2F_SOLLC1.040e-2887.88Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.040e-2887.88Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.358e-2886.36Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB23_PETSP1.358e-2886.36Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_ARATH1.358e-2889.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC1.358e-2886.36Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ARATH1.358e-2889.39Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC07008H05SK NTLeaf1 Citrus clementina cDNA clone C07008H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300334 ID=CX300334; Name=CX300334; organism=Citrus clementina; type=EST; length=389bp
CCCCGGGCTGCAGGGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGT
CAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCT
TTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGAC
CACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTT
TGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCT
GTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATG
GACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGA
TCTTTTATTTCCATCAAAAAAAAAAAAAAAAACTCGAGG
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