CX300337

Overview
NameCX300337
Unique NameCX300337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.725e-23
Identity = 51/118 (43.22%), Postives = 78/118 (66.10%), Query Frame = 3
Query:   33 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 386
            MG    KL  R+F  +E ++++VGLD AGKTTILY+    E+V T  TIG NVE +  +   F +WD+GGQ+ +R  W  Y+ N + +I V+DS DR+R++  R+EL++ML  + L++
Sbjct:    1 MGQLIAKLM-RIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQN 117          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.725e-23
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L+E++L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKL 116          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.253e-23
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L E++L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL 116          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.253e-23
Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +E+RIL++GLD  GKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L+E++L
Sbjct:   16 QEVRILLLGLDNGGKTTLLKQLASEDITHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKL 116          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.253e-23
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  E   EL  +L E++L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL 116          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.843e-23
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 116          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.843e-23
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +L E++L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 116          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.843e-23
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   75 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            ++EMRIL++GLD AGKTTIL +     I T  PT+GFN++T+E+   +  +WDVGGQ  +R  WR+YF++T GL++VVDS DR R+     EL  +L E+ L
Sbjct:   14 EREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERL 115          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.019e-23
Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP W++YF+NT  LI+V+DS DR R  E   EL  +L E++L
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL 116          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.019e-23
Identity = 50/105 (47.62%), Postives = 78/105 (74.29%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRD 386
            K+  IL++GLD+AGK+T+LY+LK  E + TIPTIGFNVE V+ + +++ TVWDVGGQ+K+R +W  Y +N QGL++VVD S  + R+ ++R E   +L  + +++
Sbjct:   12 KQAHILLLGLDSAGKSTLLYRLKFAETLATIPTIGFNVEMVQLQSSLTLTVWDVGGQEKMRTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKN 116          
The following BLAST results are available for this feature:
BLAST of CX300337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARL5C_MOUSE1.725e-2343.22ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARL3_TAEGU1.725e-2350.50ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARL3_PIG2.253e-2350.50ADP-ribosylation factor-like protein 3 OS=Sus scro... [more]
ARL3_DANRE2.253e-2349.50ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARL3_BOVIN2.253e-2350.50ADP-ribosylation factor-like protein 3 OS=Bos taur... [more]
ARL3_RAT3.843e-2350.50ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL3_MOUSE3.843e-2350.50ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL2_DROME3.843e-2349.02ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL3_HUMAN5.019e-2349.50ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
ARL14_MOUSE5.019e-2347.62ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC07008H08SK NTLeaf1 Citrus clementina cDNA clone C07008H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300337 ID=CX300337; Name=CX300337; organism=Citrus clementina; type=EST; length=387bp
CCCCGGGCTGCAGGCTCGTGAGATAACAGAAAATGGGGCTGTCATTTACG
AAGCTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAATTCTGATGGT
GGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCG
GTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTGGAGACTGTG
GAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAGGATAA
GATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAGGGCTTATCT
TTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAA
CTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATG
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