CX300337

Overview
NameCX300337
Unique NameCX300337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 3
Query:   33 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 386
            MG    KL S +F  +E  +++VGLD  GKTTILY+    E+V   PTIG NVE +      F +WD+   + +  +W  Y+ NT+ +I V+DS DRDR++  R+EL++ML  + L+D
Sbjct:    1 MGQLIAKLMS-IFGNQEHTVIIVGLDNEGKTTILYRFLTNEVVHMCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQD 117          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.697e-21
Identity = 46/99 (46.46%), Postives = 69/99 (69.70%), Query Frame = 3
Query:   87 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +++M+GLD AGKTTILYKLK   +V T+PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  +
Sbjct:   12 QVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNM 110          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.135e-21
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   81 EMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 371
            E R++++GLD AGKT+I+ +LK  ++ T +   PTIGFN+ET+ YKN     WDVGG  K+R LW+HY+ N Q + +V+D    +R  EA  EL+R++++
Sbjct:  369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSD 468          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARF_ENCCU (ADP-ribosylation factor OS=Encephalitozoon cuniculi GN=ARF-1 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.331e-20
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 3
Query:   39 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 368
            L +TKL      + E  I M+GLD AGKTT+L  L+ GE+  T+PT+GFN E V   ++ F VWD+GGQ+     W  Y     G+I++VD  D  R  ++ +EL R+LN
Sbjct:   11 LLYTKLRGLFSGQSERSITMIGLDGAGKTTLLLYLQTGEVHQTVPTLGFNCENVTLGSMKFQVWDIGGQNSFMRFWHQYINEGCGIIYMVDCADPQRFGKSGEELWRILN 120          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 3
Query:   42 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            S    F  LF K+EM + +VGL  +GKTT++  +  G  +  TIPTIGFN++ V   N++  +WD+GGQ + R +W  Y +    ++FVVDS DR++  +++  L  ++N+  L
Sbjct:    6 SIINFFKSLFWKQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPL 119          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 41/110 (37.27%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   57 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 383
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    ++++VD+ DR++V  +R+ELH +L++ +L+
Sbjct:   12 FKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQ 121          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 39/110 (35.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   57 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 383
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 39/110 (35.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   57 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 383
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 39/110 (35.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   57 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 383
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 39/110 (35.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   57 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 383
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQ 121          
The following BLAST results are available for this feature:
BLAST of CX300337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARL5C_HUMAN3.597e-2141.53Putative ADP-ribosylation factor-like protein 5C O... [more]
ARL11_RAT4.697e-2146.46ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARD1_CAEEL6.135e-2145.00Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
ARF_ENCCU2.331e-2042.73ADP-ribosylation factor OS=Encephalitozoon cunicul... [more]
ARL8_DICDI1.511e-1937.72ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
AR8BA_DANRE1.511e-1937.27ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_RAT3.366e-1935.45ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE3.366e-1935.45ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN3.366e-1935.45ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
ARL8B_MACFA4.397e-1935.45ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]

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Properties
Property NameValue
Genbank descriptionC07008H08SK NTLeaf1 Citrus clementina cDNA clone C07008H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300337 ID=CX300337; Name=CX300337; organism=Citrus clementina; type=EST; length=387bp
CCCCGGGCTGCAGGCTCGTGAGATAACAGAAAATGGGGCTGTCATTTACG
AAGCTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAATTCTGATGGT
GGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCG
GTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTGGAGACTGTG
GAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAGGATAA
GATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAGGGCTTATCT
TTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAA
CTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATG
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