CX300337

Overview
NameCX300337
Unique NameCX300337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 3
Query:   54 LFSRLFAKKEMRILMVGLDAAGKTTIL------YKLKLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            L++    K++  IL++GLD AGKTT L      Y L    +    PT+G NV T  V+ K I    WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L  ++ ++E+
Sbjct:    8 LYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYSLAFKALEKIQPTVGQNVATIPVDSKQI-LKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEI 123          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.030e-15
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEEL 119          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.030e-15
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEEL 119          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.570e-15
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +    EL
Sbjct:   22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKEL 122          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.580e-15
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEEL 119          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.580e-15
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 383
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   +I FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +    EL+
Sbjct:   22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELK 123          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 383
            K  ++L +GLD AGKTT+L+ LK   +  + PT+    E +   N  FT +D+GG  + R +W+ YF    G++F+VD+ D  R  E++ EL  +L  ++L+
Sbjct:   19 KNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLK 120          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 38/115 (33.04%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   36 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R+VE++ EL+ ++ ++ +
Sbjct:   11 GFSSVLQFLGLY-KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETI 124          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 38/115 (33.04%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   36 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R+VE++ EL+ ++ ++ +
Sbjct:   11 GFSSVLQFLGLY-KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETI 124          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL15_BOVIN (ADP-ribosylation factor-like protein 15 OS=Bos taurus GN=ARL15 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.496e-14
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 3
Query:   72 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS-NDRDRVVEARDELHRMLNEDEL 380
            A+ E  ++ +GL  +GKT++L KL      + + T GF+++ V ++N    V ++GG D IR  W  Y+Q +QG+IFV+DS +  D +  AR+ELH  L   +L
Sbjct:   29 ARPEYDLVCIGLTGSGKTSLLSKLCSESPDSVVSTTGFSIKAVPFQNAILNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQL 132          
The following BLAST results are available for this feature:
BLAST of CX300337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARL3_YEAST3.852e-1538.46ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]
SAR1_EMENI5.030e-1538.61Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_ASPNC5.030e-1538.61Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_KLULA6.570e-1541.58Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_ASPTN8.580e-1538.61Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
SAR1_ASHGO8.580e-1540.20Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_YARLI1.464e-1436.27Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1A_PONAB1.464e-1433.04GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN1.464e-1433.04GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
ARL15_BOVIN2.496e-1437.50ADP-ribosylation factor-like protein 15 OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionC07008H08SK NTLeaf1 Citrus clementina cDNA clone C07008H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300337 ID=CX300337; Name=CX300337; organism=Citrus clementina; type=EST; length=387bp
CCCCGGGCTGCAGGCTCGTGAGATAACAGAAAATGGGGCTGTCATTTACG
AAGCTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAATTCTGATGGT
GGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCG
GTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTGGAGACTGTG
GAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAGGATAA
GATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAGGGCTTATCT
TTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAA
CTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATG
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