CX300337

Overview
NameCX300337
Unique NameCX300337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +++ +LMVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  ML    +
Sbjct:   20 RKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI 120          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.031e-13
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 3
Query:   75 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 368
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 32/101 (31.68%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL 380
            +++ ++MVGLD AGKT     ++        PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  +L    +
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRI 120          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:   78 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 374
            ++  +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  AR ELH++L++D
Sbjct:   76 EQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKD 175          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 3
Query:   45 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 368
            F      LF K    IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+
Sbjct:   24 FQNFVKSLFGKPSS-ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLS 130          
BLAST of CX300337 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = 3
Query:   75 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 365
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLI 113          
The following BLAST results are available for this feature:
BLAST of CX300337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
AR13B_HUMAN4.708e-1333.66ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
SAR1_TOBAC8.031e-1336.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
AR13B_MOUSE1.370e-1231.68ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
ARL10_HUMAN6.799e-1237.00ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
SAR1_ENCCU1.515e-1135.19Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
ARL9_HUMAN4.407e-1134.69ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC07008H08SK NTLeaf1 Citrus clementina cDNA clone C07008H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300337 ID=CX300337; Name=CX300337; organism=Citrus clementina; type=EST; length=387bp
CCCCGGGCTGCAGGCTCGTGAGATAACAGAAAATGGGGCTGTCATTTACG
AAGCTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAATTCTGATGGT
GGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCG
GTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTGGAGACTGTG
GAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAGGATAA
GATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAGGGCTTATCT
TTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCTAGAGATGAA
CTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATG
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