CX300339

Overview
NameCX300339
Unique NameCX300339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length359
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.498e-14
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            +E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAGFPHNVVF
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.263e-14
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            ++VLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVF
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.565e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            IEVLLGG DGSLAFVP+ FS++ GEKIVFKNNAGFPHNVVF
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.269e-14
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   74 GLKAGATPARVVGSTMKASASAVPKLSIKATLKD-VGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLKAG  P     S    +  +    S+KA+ K+ +G                  +EVLLGG DGSLAFVPS+  V++GE +VFKNNAGFPHNV+F
Sbjct:   16 GLKAGRAPTTPSTSIKPPTPMS---FSVKASFKEAIGTALVATAAGAVLASNALAVEVLLGGSDGSLAFVPSNIEVAAGETVVFKNNAGFPHNVLF 108          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.493e-14
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            IE+ LGGDDG+LAFVP SF+V++GEKIVFKNNAGFPHN+VF
Sbjct:    1 IEIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.493e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVF
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.493e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVF
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.240e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            IEVLLG DDG LAFVP +FS+S+GEKI FKNNAGFPHNVVF
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.762e-13
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAGFPHNVVF
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.711e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            ++VLLG DDG LAFVP++FSV SGEKI FKNNAGFPHNVVF
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVF 41          
The following BLAST results are available for this feature:
BLAST of CX300339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PLAS_SAMNI2.498e-1482.93Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_SOLTU3.263e-1482.93Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_CAPBU5.565e-1485.37Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]
PLAS_FRIAG7.269e-1444.79Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_RUMOB9.493e-1480.49Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]
PLAS2_TOBAC9.493e-1485.37Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS1_TOBAC9.493e-1485.37Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_SOLCR1.240e-1382.93Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_PHAVU2.762e-1385.37Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]
PLAS_MERPE4.711e-1380.49Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC07008H11SK NTLeaf1 Citrus clementina cDNA clone C07008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300339 ID=CX300339; Name=CX300339; organism=Citrus clementina; type=EST; length=359bp
AAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCACCTCTGCAG
CTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACCAGCC
AGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAGCT
CAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGCCACAG
CTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTTTTGCTT
GGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTCTGTCAG
CTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCCCACACAACG
TTGTTTTCG
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