CX300339

Overview
NameCX300339
Unique NameCX300339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length359
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2 
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            +EVLLG  DG LAFVP+SF VS+G+ IVFKNNAGFPHNVVF
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVF 41
[Close]
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  239 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            EVLLG  DG L F PS+FSV+SGEKIVFKNNAGFPHNVVF
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFPHNVVF 41
[Close]
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.979e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:  239 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            EV LG DDG L F PSSF+V++GEKI FKNNAGFPHN+VF
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVF 41
[Close]
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 2 
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            +EVL+GG  G LAF+P+   V++GE+IVFKNNAGFPHNV+F
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFPHNVIF 41
[Close]
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  239 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            EV LG DDG+L F PSSFSV+ GE I FKNNAGFPHN+VF
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFPHNIVF 41
The following BLAST results are available for this feature:
BLAST of CX300339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PLAS_VICFA2.338e-1278.05Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_LACSA2.338e-1282.50Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_PETCR1.979e-1175.00Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_GINBI7.522e-1165.85Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_DAUCA9.824e-1175.00Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07008H11SK NTLeaf1 Citrus clementina cDNA clone C07008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300339 ID=CX300339; Name=CX300339; organism=Citrus clementina; type=EST; length=359bp
AAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCACCTCTGCAG
CTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACCAGCC
AGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAGCT
CAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGCCACAG
CTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTTTTGCTT
GGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTCTGTCAG
CTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCCCACACAACG
TTGTTTTCG
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