CX300348

Overview
NameCX300348
Unique NameCX300348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:645..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.722e-47
Identity = 90/136 (66.18%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 TEVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            TE ++ LGADSFL S+DP++++ AMGT+D IIDT+SA H ++PL+GLLK  GKLV VG P KPLEL V  L+ GRK + GS+ GGMKETQEM+DF  KHNITADIE+I M  +NTAMERL KADV+YRFVID+AN+
Sbjct:  220 TEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANS 355          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.590e-45
Identity = 85/137 (62.04%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    1 TEVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            +E ++ LGADSFL S DP++++ A GT+D IIDT+SAVH ++ L+GLLK  GKLV VG P KPL+LP+  L+ GRK + GS+ GG+KETQEM+DF  KHNI A+IE+I MD +NTA+ERL+KADV+YRFVID+AN+L
Sbjct:  213 SEAIDVLGADSFLLSSDPEKMKAATGTMDYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQLPIFPLVAGRKLIGGSNFGGLKETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANSL 349          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 5.184e-44
Identity = 88/136 (64.71%), Postives = 109/136 (80.15%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E LE LGAD+F+ S++ D++  A GT+DGII+TVSA  PI PL+GLLK  GK++LVG P+KP+E+P  +L+   KT++GS  GGM +T EMID AAKH +TA+IEVI  DYVNTAMERLAKADVRYRFVIDI NTL
Sbjct:  215 EALERLGADAFVVSKNADEMNAATGTMDGIINTVSANIPIAPLLGLLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTL 349          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.155e-43
Identity = 84/136 (61.76%), Postives = 109/136 (80.15%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E ++ LGADSFL + D  +++ A+GT+D IIDTVSA H +LPL  LLK  GKLV +G P+KPL+LP+ SL++GRK V GS  GGMKETQEM++F AKH I +DIE+I M  +N+AM+RLAK+DVRYRFVID+AN+L
Sbjct:  218 EAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.776e-43
Identity = 83/138 (60.14%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 417
            E LE LGAD+F+ S   ++++ A  T+DG+I+TVSA  P+ P + LLK  GK++LVG P+ PLE+P  SL+ G +T++GS+ GGM +TQEMI+ AAKH +TADIEVI  D VNTAMERLAKADVRYRFVID+ NTL+A
Sbjct:  225 EALERLGADAFVVSSSAEEMEAARSTMDGVINTVSANTPMAPYLALLKPNGKMILVGLPENPLEVPPFSLVHGNRTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVRYRFVIDVGNTLHA 362          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.081e-41
Identity = 79/135 (58.52%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E LEHLGAD FL SRD  Q+  A GT+DGI++TVSA HP+ PL  L+K   ++V VGAP +PLELP  +++ G K ++G+  GG+++ Q M+DFA +H ITA++EVI MDYVNTAMERL K DVRYRFVID+A +
Sbjct:  292 EALEHLGADEFLVSRDAGQMAAAAGTMDGILNTVSAWHPVAPLFALMKPMAQMVFVGAPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGS 426          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.844e-41
Identity = 81/136 (59.56%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E ++ LGADSFL + D  +++ A+GT+D IIDTVSA H +LPL  LLK  GKLV +G  +KPL+LP+  L++GRK V GS  GGMKETQEM++F AKH I +DIE+I M  +N+AM+RL K+DVRYRFVID+AN+L
Sbjct:  217 EAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 9.150e-41
Identity = 79/138 (57.25%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 417
            E LEHLGAD FL SRD  Q+  A  T+DGI++TVSA HPI PL  L+K   ++V VG P +PLELP  +++ G K ++G+  GG+++ Q M+DFA +H ITA++EVI MDYVNTAMERL K DVRYRFVID+A +  A
Sbjct:  295 EALEHLGADEFLVSRDAGQMAAAAATMDGILNTVSAWHPIAPLFSLMKPMAQMVFVGGPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGSSLA 432          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.321e-39
Identity = 78/136 (57.35%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E +E LGAD+FL S + +Q++ A GT+DGIIDTVSAVH + PL+ LL++ G+LV VG+P KP++L +  L    K+V+GS  GGM++TQEM+DFA +H + A++EVI M+ VN AMERL K DVRYRFVID+ANT+
Sbjct:  223 EAVERLGADAFLLSTNAEQMKAAAGTMDGIIDTVSAVHDLTPLITLLRTHGQLVPVGSPGKPVQLALYPLQSDGKSVAGSMIGGMRDTQEMVDFAVEHGVAAEVEVIGMEDVNGAMERLQKGDVRYRFVIDVANTM 358          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.254e-39
Identity = 79/138 (57.25%), Postives = 105/138 (76.09%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 417
            E LE LGAD+FL+SRD + +  A  T+DGIIDTVSA HP++PL+ LLK +G++V+VGAP  PL+LP I++I G K V+GS  G + E Q M+DFA +H I AD+EV++M  VN A+ RL + DVRYRFVID+A TL+A
Sbjct:  217 EALERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAAPLQLPAIAIIDGGKRVAGSGGGSVAECQAMLDFAGEHGIAADVEVVAMGDVNAALGRLERNDVRYRFVIDVAGTLHA 354          
The following BLAST results are available for this feature:
BLAST of CX300348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
MTDH_MEDSA1.722e-4766.18Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH1_STYHU3.590e-4562.04Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH5_ORYSJ5.184e-4464.71Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH2_ARATH1.155e-4361.76Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH3_ORYSJ9.776e-4360.14Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CAD8B_ORYSJ1.081e-4158.52Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH3_ARATH1.844e-4159.56Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CAD8C_ORYSJ9.150e-4157.25Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CADH9_ORYSJ1.321e-3957.35Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CAD8A_ORYSJ2.254e-3957.25Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC07009A12SK SaltLeaf1 Citrus clementina cDNA clone C07009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300348 ID=CX300348; Name=CX300348; organism=Citrus clementina; type=EST; length=463bp
ACTGAAGTTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGTGA
CCCTGACCAATTGCAGGGTGCTATGGGCACATTGGATGGTATTATTGACA
CGGTGTCCGCTGTGCACCCCATTTTGCCATTGGTCGGTCTATTAAAGTCC
CAGGGCAAGCTTGTTCTGGTTGGTGCTCCGGACAAGCCACTCGAGCTACC
TGTGATTTCCTTAATTATGGGGAGGAAGACGGTGTCAGGGAGCAGCACTG
GGGGAATGAAAGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAAT
ATAACAGCTGACATTGAGGTTATTTCGATGGATTATGTCAATACGGCAAT
GGAGAGGCTTGCCAAGGCTGATGTTCGGTATCGATTTGTCATTGATATTG
CAAACACCTTGTACGCCACCAAACCTTGAAGAATCAGAATCAGATTGATG
TCTTCAATTCACA
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