CX300348

Overview
NameCX300348
Unique NameCX300348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:645..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.461e-38
Identity = 75/138 (54.35%), Postives = 104/138 (75.36%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 417
            E L  LGAD+FL+SRD + +  A  T+DGIIDTVSA HP++PL+ LLK +G++V+VGAP  PL+LP  ++I G K V+G+  G + E Q M+DFA +H I AD+EV++MD VN A+ RL + DVRYRFV+D+A T++A
Sbjct:  217 EALGRLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNGVGSVAECQAMLDFAGEHGIAADVEVVAMDAVNAALGRLERNDVRYRFVVDVAGTMHA 354          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.254e-38
Identity = 77/136 (56.62%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E LE LGAD F+ S +  +++ AMGT+ GII+T SA   +   + LLK +GK++LVG P+KPL++P  +L+ G K ++GS  G + ETQEMIDFAA+H + ADIE+I  D VNTAMERLAK DVRYRFV+DI NTL
Sbjct:  241 EALERLGADGFIVSTNASEMKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTL 376          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 4.250e-38
Identity = 78/132 (59.09%), Postives = 100/132 (75.76%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 399
            E  E+L AD+F+ S D  Q+Q    +LD IIDTV+A H + P++ LLK  GKLVLVGAP+KP+ELP   LI G++TVSGS TGGMKETQEM+D   +HNIT DIE++S D +N A+ RLA+ DVRYRFVI++
Sbjct:  223 EARENLKADNFVVSTDQKQMQAMTRSLDYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVRYRFVINV 354          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.368e-35
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 399
            E LEHLGAD +L S D D++Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKET+EM+DF  +  +T+ IE++ MDY+NTAMERL K DVRYRFV+D+
Sbjct:  219 EALEHLGADDYLVSSDTDKMQEASDSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVRYRFVVDV 350          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.280e-34
Identity = 70/136 (51.47%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    1 TEVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            TE LEHLGAD++L S D + ++ A  +LD I DT+  VHP+ P + LLK  GKL+L G  + PL+     +++GRK+++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+A +
Sbjct:  217 TEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVAGS 352          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.671e-34
Identity = 70/135 (51.85%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E ++HLGAD++L S D  Q+Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK ++GS  G MKET+EM+DF  +  IT+ IEV+ MDY+NTA ERL K DVRYRFV+D+A +
Sbjct:  220 EAIDHLGADAYLVSSDATQMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSMKETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGS 354          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.723e-34
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 TEVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            TE LEHLGAD++L S D + ++ A  +LD I DT+  VHP+ P + LLK  GKL+L G  + PL+     +++GRK+++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+  +
Sbjct:  218 TEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.723e-34
Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E LEHLGAD +L S D D++Q A  +LD IIDTV   HP+   + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKET+EM+DF  +  +T+ IE++ MDY+NTAMERL K DV YRFV+D+A +
Sbjct:  219 EALEHLGADDYLVSSDTDKMQEAADSLDYIIDTVPVGHPLELYLSLLKIDGKLILIGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVSYRFVVDVAGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.723e-34
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 TEVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            TE LEHLGAD++L S D + ++ A  +LD I DT+  VHP+ P + LLK  GKL+L G  + PL+     +++GRK+++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+  +
Sbjct:  218 TEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 4.863e-34
Identity = 69/135 (51.11%), Postives = 95/135 (70.37%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E +EHLGAD +L S D + +Q A   LD IIDTV  VHP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKET+EM++F  +  + + IEVI MDY+NTA ERL K DVRYRFV+D+A +
Sbjct:  219 EAMEHLGADEYLVSSDVESMQKAADQLDYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGS 353          
The following BLAST results are available for this feature:
BLAST of CX300348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CAD8D_ORYSJ1.461e-3854.35Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CADH7_ORYSJ3.254e-3856.62Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH6_ORYSJ4.250e-3859.09Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH1_TOBAC3.368e-3553.03Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH_EUCBO1.280e-3451.47Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH1_ARACO1.671e-3451.85Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH_EUCGL3.723e-3450.74Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_TOBAC3.723e-3451.11Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH2_EUCGU3.723e-3450.74Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH_POPDE4.863e-3451.11Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionC07009A12SK SaltLeaf1 Citrus clementina cDNA clone C07009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300348 ID=CX300348; Name=CX300348; organism=Citrus clementina; type=EST; length=463bp
ACTGAAGTTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGTGA
CCCTGACCAATTGCAGGGTGCTATGGGCACATTGGATGGTATTATTGACA
CGGTGTCCGCTGTGCACCCCATTTTGCCATTGGTCGGTCTATTAAAGTCC
CAGGGCAAGCTTGTTCTGGTTGGTGCTCCGGACAAGCCACTCGAGCTACC
TGTGATTTCCTTAATTATGGGGAGGAAGACGGTGTCAGGGAGCAGCACTG
GGGGAATGAAAGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAAT
ATAACAGCTGACATTGAGGTTATTTCGATGGATTATGTCAATACGGCAAT
GGAGAGGCTTGCCAAGGCTGATGTTCGGTATCGATTTGTCATTGATATTG
CAAACACCTTGTACGCCACCAAACCTTGAAGAATCAGAATCAGATTGATG
TCTTCAATTCACA
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