CX300348

Overview
NameCX300348
Unique NameCX300348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.295e-34
Identity = 67/135 (49.63%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E LE LGAD++L S+D +++Q A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  G M+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A +
Sbjct:  219 EALEVLGADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVARS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.083e-33
Identity = 66/135 (48.89%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E +E LGAD++L S+D +++  A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  GGM+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A +
Sbjct:  219 EAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPPLILGRRSIAGSFIGGMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.083e-33
Identity = 67/133 (50.38%), Postives = 98/133 (73.68%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 402
            E LE LGAD++L S+D +++Q A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  G M+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A
Sbjct:  219 EALEVLGADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVA 351          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.022e-33
Identity = 65/135 (48.15%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E +E LGAD++L S+D +++  A  +LD I+DT+   HP+ P + LLK+ GKLV++G   +PL      LI+GR++++GS  G M+ETQE +DF A+  +++ IEV+ +DY+NTAMERL K DVRYRFV+D+A +
Sbjct:  219 EAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.668e-32
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E L+HLGAD +L S D  ++Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G MKE  EM++F  + ++++ IE++ MDY+NTA ERL K DVRYRFV+D+A +
Sbjct:  219 EALDHLGADDYLVSSDAARMQEAADSLDYIIDTVPVFHPLEPYLSLLKIDGKLILMGVVNTPLQFVSPMVMLGRKSITGSFIGSMKELAEMLEFCKEKDLSSTIEIVKMDYINTAFERLEKNDVRYRFVVDVAGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.324e-31
Identity = 67/136 (49.26%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 TEVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            TE LEHLGAD++L S D + ++ A  +LD + DT+  VHP+ P + LLK  GKL+L G  + PL+   IS ++  ++++GS  G MKET+EM++F  +  +T+ IEVI MDYVNTA+ERL K DVRYRFV+D+  +
Sbjct:  218 TEALEHLGADAYLVSSDENGMKEATDSLDYVFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQF--ISPMVMLESITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGS 351          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.464e-30
Identity = 64/137 (46.72%), Postives = 95/137 (69.34%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLY 414
            E LE LGAD++L S D   +Q A  +LD IIDTV   HP+ P + LLK  GKL+L+G  + PL+     +++GRK+++GS  G +KET+EM++F  +  +T+ IE+++MDY+N A ERL K DVRYRFV+D+  + +
Sbjct:  220 EALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKF 356          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.464e-30
Identity = 64/135 (47.41%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E ++ LGAD +L S D  Q+  AM +LD IIDTV   HP+ P + LLK  GKLVL+G   +PL      +++GRKT++GS  G ++ET+E++ F     +T+ IEV+ MDY+N A+ERL + DVRYRFV+D+A +
Sbjct:  220 EAMDDLGADDYLVSSDEAQMAAAMDSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIGEPLSFVSPMVMLGRKTITGSFIGSIEETEEVLRFCVDKGLTSQIEVVKMDYLNQALERLERNDVRYRFVVDVAGS 354          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.240e-29
Identity = 62/135 (45.93%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E +EHLGAD ++ S DP ++Q    +LD IIDTV   HP+ P +  LK  GKL+L+G  + PL+     +I+GRK +SGS  G +KET+E++ F  +  +T+ IE + +D +N A ERL K DVRYRFV+D+A +
Sbjct:  220 EAIEHLGADDYVVSSDPAEMQRLADSLDYIIDTVPVFHPLDPYLACLKLDGKLILMGVINTPLQFVTPLVILGRKVISGSFIGSIKETEEVLAFCKEKGLTSTIETVKIDELNIAFERLRKNDVRYRFVVDVAGS 354          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/135 (45.93%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E ++ LGAD++L S D   +  A  +LD IIDTV   HP+ P + LLK  GKL+L+G  ++PL      +++GRK ++GS  G M ET+E+++F     +T+ IEV+ MDYVN A+ERL + DVRYRFV+D+A +
Sbjct:  219 EAMDDLGADAYLVSSDAAAMAAAGDSLDYIIDTVPVHHPLEPYLALLKLDGKLILMGVINQPLSFISPMVMLGRKAITGSFIGSMAETEEVLNFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 353          
The following BLAST results are available for this feature:
BLAST of CX300348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CADH2_PICAB8.295e-3449.63Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH_PINTA1.083e-3348.89Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH7_PICAB1.083e-3350.38Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH_PINRA7.022e-3348.15Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH1_OCIBA2.668e-3248.15Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH1_EUCGU1.324e-3149.26Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH_MEDSA1.464e-3046.72Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH_LOLPR1.464e-3047.41Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH4_ARATH1.240e-2945.93Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH2_ORYSJ3.606e-2945.93Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC07009A12SK SaltLeaf1 Citrus clementina cDNA clone C07009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300348 ID=CX300348; Name=CX300348; organism=Citrus clementina; type=EST; length=463bp
ACTGAAGTTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGTGA
CCCTGACCAATTGCAGGGTGCTATGGGCACATTGGATGGTATTATTGACA
CGGTGTCCGCTGTGCACCCCATTTTGCCATTGGTCGGTCTATTAAAGTCC
CAGGGCAAGCTTGTTCTGGTTGGTGCTCCGGACAAGCCACTCGAGCTACC
TGTGATTTCCTTAATTATGGGGAGGAAGACGGTGTCAGGGAGCAGCACTG
GGGGAATGAAAGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAAT
ATAACAGCTGACATTGAGGTTATTTCGATGGATTATGTCAATACGGCAAT
GGAGAGGCTTGCCAAGGCTGATGTTCGGTATCGATTTGTCATTGATATTG
CAAACACCTTGTACGCCACCAAACCTTGAAGAATCAGAATCAGATTGATG
TCTTCAATTCACA
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