CX300348

Overview
NameCX300348
Unique NameCX300348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:645..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 62/135 (45.93%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E ++HLGAD++L S D   +  A  +LD IIDTV   HP+ P + LLK  GKLVL+G   +PL      +++GRK ++GS  G + ET E++ F     +T+ IEV+ M YVN A+ERL + DVRYRFV+D+A +
Sbjct:  219 EAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKLVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.370e-28
Identity = 61/132 (46.21%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 399
            E L+ LGAD ++   D  ++     +LD +IDTV   H + P + LLK  GKL+L+G  + PL+     L++GRK ++GS  G MKET+EM++F  +  +++ IEV+ MDYVNTA ERL K DVRYRFV+D+
Sbjct:  219 EALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDV 350          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.883e-28
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELP-VISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVID 396
            E  + LGAD  +NSR+ D++   + + D I++TV+A H +     LLK  G + LVGAP  P + P V +LIM R+ ++GS  GG+ ETQEM+DF A+H I ADIE+I  D +N A ER+ + DV+YRFVID
Sbjct:  212 EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVID 343          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.515e-27
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E ++HLGAD++L S D   +  A  +LD IIDTV   HP+ P + LLK  GK VL+G   +PL      +++GRK ++GS  G + ET E++ F     +T+ IEV+ M YVN A++RL + DVRYRFV+D+A +
Sbjct:  219 EAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKHVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALDRLERNDVRYRFVVDVAGS 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.409e-27
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 402
            E LE LGA+ +  + DP       G  D I++TVSA   +   + +L+  G LV VGAP KP    V SLIMGR++++GS  GG++ETQEM+DFAA+H I   IEVI  D V+ A ER+ ++DVRYRFVIDI+
Sbjct:  216 EALE-LGANHYFATSDPATFTALAGRFDVILNTVSANLDVDAYLSMLRIDGTLVSVGAPAKPDTYSVFSLIMGRRSIAGSLVGGIQETQEMLDFAAEHGIEPKIEVIGADQVDEAYERILRSDVRYRFVIDIS 347          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25
Identity = 61/136 (44.85%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E L  LGA++F+ S D DQ++    +LD ++DT S  H   P + LLK  G  VLVG P + +++   +L +G + ++GS TGG K TQ+M+DF A H I  +IEVI +  +N A+ER+ K D++YRFVIDI N+L
Sbjct:  220 EALNLLGAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSE-IKISPANLNLGMRMLAGSVTGGTKITQQMLDFCAAHKIYPNIEVIPIQKINEALERVVKKDIKYRFVIDIKNSL 354          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25
Identity = 57/128 (44.53%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   19 LGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 402
            LGA S+  + DPD  +   G  D I++TVSA   +   + LL   G LV +G P+ P+ +P  +L + R++++GS+ GG+ ETQEM++F A+H +T +IE+I  DY+N A ER+  +DVRYRFVIDI+
Sbjct:  217 LGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25
Identity = 57/128 (44.53%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   19 LGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 402
            LGA S+  + DPD  +   G  D I++TVSA   +   + LL   G LV +G P+ P+ +P  +L + R++++GS+ GG+ ETQEM++F A+H +T +IE+I  DY+N A ER+  +DVRYRFVIDI+
Sbjct:  217 LGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.159e-25
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E ++ LGAD+F+ S D +Q++    +L+ IIDT S  HP  P + LLK  G + L+  P + +++   +L +G +++SGS TGG K+ QEMI+F A + I  DIE+I +DY+N A++RL   DVR+RFVIDI N+
Sbjct:  219 EAIDLLGADNFVVSSDENQMETLKSSLNFIIDTASGDHPFDPYLTLLKVGGVMALLSFPSE-IKVHPANLNLGGRSLSGSVTGGTKDIQEMINFCAANKIYPDIEMIKIDYINEALQRLVDRDVRFRFVIDIENS 352          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.675e-24
Identity = 59/135 (43.70%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 408
            E +  LGAD+F+ S D +Q++    +L  IIDT S  H   P + LLK  G +VL+  P + +++   +L +  ++++GS TGG K+ QEMI+F A +N+  DIE+I +DYVN A++RL   DVR+RFVIDI N+
Sbjct:  219 EAINLLGADNFVISSDENQMESLKSSLHFIIDTASGDHQFDPYLSLLKVGGVMVLLSFPSE-IKVHPENLNLAARSLAGSVTGGTKDIQEMINFCAANNVYPDIEMIKIDYVNEALQRLINRDVRFRFVIDIENS 352          
The following BLAST results are available for this feature:
BLAST of CX300348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CADH_MAIZE1.049e-2845.93Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH5_ARATH1.370e-2846.21Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
YAHK_ECOLI8.883e-2847.73Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
CADH_SACOF1.515e-2744.44Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
ADHA_BACSU4.409e-2749.62Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
CADH1_ARATH1.086e-2544.85Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
ADHC_MYCTU1.852e-2544.53NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO1.852e-2544.53NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH1_ORYSJ3.159e-2544.44Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH4_ORYSJ2.675e-2443.70Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC07009A12SK SaltLeaf1 Citrus clementina cDNA clone C07009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300348 ID=CX300348; Name=CX300348; organism=Citrus clementina; type=EST; length=463bp
ACTGAAGTTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGTGA
CCCTGACCAATTGCAGGGTGCTATGGGCACATTGGATGGTATTATTGACA
CGGTGTCCGCTGTGCACCCCATTTTGCCATTGGTCGGTCTATTAAAGTCC
CAGGGCAAGCTTGTTCTGGTTGGTGCTCCGGACAAGCCACTCGAGCTACC
TGTGATTTCCTTAATTATGGGGAGGAAGACGGTGTCAGGGAGCAGCACTG
GGGGAATGAAAGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAAT
ATAACAGCTGACATTGAGGTTATTTCGATGGATTATGTCAATACGGCAAT
GGAGAGGCTTGCCAAGGCTGATGTTCGGTATCGATTTGTCATTGATATTG
CAAACACCTTGTACGCCACCAAACCTTGAAGAATCAGAATCAGATTGATG
TCTTCAATTCACA
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