CX300348

Overview
NameCX300348
Unique NameCX300348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: YJGB_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjgB OS=Escherichia coli (strain K12) GN=yjgB PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   19 LGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVI 393
            +GAD  +NSRDP  L+   G  D II+TV+      P    L   G    VGA   PL +P  +LI G ++VSGS+TG   E ++++ FAA+  +    E+  M  +N A++ +     RYR V+
Sbjct:  211 MGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVL 335          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 40/134 (29.85%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   10 LEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            + +LGA+  + S +  Q+    G+ D I+ T+   H I+P + LLK +  +  VG    P  +  + L      +  S   G  E +EM+ F ++HNI  D+++I  D +N   ++L ++  +YR+VIDI  +L
Sbjct:  288 VNNLGANESILSTNVWQMNQHKGSFDFILSTIPMAHDIVPYIELLKYKATICTVGELF-PTVINGMDLAQHPCFLQSSLIAGSDEIKEMLAFCSEHNIMPDVQIIKADKINDTRQKLLESKAKYRYVIDIRASL 420          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 39/132 (29.55%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   13 EHLGADSFLNSRDPD---QLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 399
            E LGAD  +++R PD   ++Q   G L G + T  +   +     +L+S+G + LVG P   + LPV   ++ R TV GS  G  ++ +E ++FA +  + A      ++ +N   ER+ +  +  R V+D+
Sbjct:  207 EKLGADLVVDARAPDAVEEVQRRTGGLHGALVTAVSPKAMEQAYSMLRSKGTMALVGLPPGQICLPVFDTVLKRITVRGSIVGTRQDLEEALEFAGEGKVAAHFSWDKIENINAIFERMEEGKIDGRIVLDL 338          
The following BLAST results are available for this feature:
BLAST of CX300348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
YJGB_ECOLI5.056e-1536.00Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
YL498_MIMIV4.006e-1229.85Probable zinc-type alcohol dehydrogenase-like prot... [more]
ADHA_RHIME1.522e-1129.55Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]

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Properties
Property NameValue
Genbank descriptionC07009A12SK SaltLeaf1 Citrus clementina cDNA clone C07009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300348 ID=CX300348; Name=CX300348; organism=Citrus clementina; type=EST; length=463bp
ACTGAAGTTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGTGA
CCCTGACCAATTGCAGGGTGCTATGGGCACATTGGATGGTATTATTGACA
CGGTGTCCGCTGTGCACCCCATTTTGCCATTGGTCGGTCTATTAAAGTCC
CAGGGCAAGCTTGTTCTGGTTGGTGCTCCGGACAAGCCACTCGAGCTACC
TGTGATTTCCTTAATTATGGGGAGGAAGACGGTGTCAGGGAGCAGCACTG
GGGGAATGAAAGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAAT
ATAACAGCTGACATTGAGGTTATTTCGATGGATTATGTCAATACGGCAAT
GGAGAGGCTTGCCAAGGCTGATGTTCGGTATCGATTTGTCATTGATATTG
CAAACACCTTGTACGCCACCAAACCTTGAAGAATCAGAATCAGATTGATG
TCTTCAATTCACA
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