CX300349

Overview
NameCX300349
Unique NameCX300349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.186e-29
Identity = 56/107 (52.34%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKP 369
            T P+G +  A  +E ++TF +MFV   VATD+RA+GELAGLAVGS V +  +FAGP++G SMNPAR+L PA+ S+ + GLWIY + P +G  +GAWVY  +R+ + P
Sbjct:  163 TTPSGPHWHALAIEIVVTFNMMFVTCAVATDSRAVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFLGPVVGTLSGAWVYTYIRFEEAP 269          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.468e-29
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKP 369
            T P G +  + V+E I+TF +MFV   VATD RA+GELAGLAVGS V +  +FAG ++G SMNPAR+LGPA+ S+ Y GLWIY + P LG  +GAW Y  +R+ + P
Sbjct:  155 TTPTGPHWHSLVIEIIVTFNMMFVTLAVATDTRAVGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASNLYTGLWIYFLGPVLGTLSGAWTYTYIRFEEAP 261          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP33_ORYSJ (Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica GN=NIP3-3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.658e-26
Identity = 52/102 (50.98%), Postives = 77/102 (75.49%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVR 354
            T+P    ++AF +EFIITF+L+F+I+ +ATD  A+ EL  +AVG+TV++N++ AGP TGASMNPAR++G AI + +Y  +W+Y+VA PLGA AG   Y  ++
Sbjct:  176 TVPNVGTVEAFFVEFIITFFLLFIITALATDPNAVKELIAVAVGATVMMNILVAGPSTGASMNPARTIGAAIATGRYTQIWVYLVATPLGAIAGTGAYVAIK 277          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.260e-25
Identity = 51/102 (50.00%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVR 354
            T+P    ++AF +EF+ TF L+F+I+ +ATD  A+ EL  +AVG+T+++N + AGP TGASMNPAR+LGPAI + +Y  +W+Y+VA PLGA AG   Y  ++
Sbjct:  203 TVPKVGTVEAFFLEFVTTFVLLFIITALATDPNAVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGRYTQIWVYLVATPLGAVAGEGFYFAIK 304          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP41_ORYSJ (Aquaporin NIP4-1 OS=Oryza sativa subsp. japonica GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    4 TLRLLFQEKQDQFAGTLPA---GSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 366
            ++  + + + D F GT P    G+ +  F+MEF+ +  LM VI+ VATD  A   + G+A+G+ V    +  GP++G SMNPAR+LGPAIV  +Y G+WIY+VAP  G   GA     VR + +
Sbjct:  148 SVNAVMRPRHDHFYGTAPVVVHGTRLP-FLMEFLASAVLMIVIATVATDGTAGKTVGGIAIGAAVGGLGLVIGPVSGGSMNPARTLGPAIVLGRYDGVWIYVVAPVAGMLVGALCNRAVRLSHR 270          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP71_ARATH (Probable aquaporin NIP7-1 OS=Arabidopsis thaliana GN=NIP7-1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   49 TLPAGSNIQAFVMEFIITFYLMFVISGV-ATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKP 369
            T PA S + AF +E I T  ++F+ S +    ++ +G L G  +G+ + L V+  GPI+G SMNPARSLGPA+V+  ++ LWIY+ AP +GA  G   Y  +    +P
Sbjct:  154 TKPALSCVSAFFVELIATSIVVFLASALHCGPHQNLGNLTGFVIGTVISLGVLITGPISGGSMNPARSLGPAVVAWDFEDLWIYMTAPVIGAIIGVLTYRSISLKTRP 261          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   70 IQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            I+  VME ++TF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+VS  +  +WIY V P +G      +Y  V
Sbjct:  140 IEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDV 235          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   67 NIQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            +I+  VME IITF L++ +   A D +  ++G +A LA+G  V  N++ AGP +G SMNPARS GPA+ +  + G W+Y V P +G      +Y  V
Sbjct:  139 SIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNV 235          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   73 QAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            +  VME I+TF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+ S  Y  +WIY V P +G      VY  V
Sbjct:  140 EGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.017e-15
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   64 SNIQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            S I+  VME +ITF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+ +  + G W+Y V P +G      VY  V
Sbjct:  137 SEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLVGGGLAGLVYGDV 234          
The following BLAST results are available for this feature:
BLAST of CX300349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NIP23_MAIZE4.186e-2952.34Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP21_MAIZE5.468e-2954.21Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
NIP33_ORYSJ5.658e-2650.98Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica G... [more]
NIP32_ORYSJ1.260e-2550.00Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
NIP41_ORYSJ1.143e-1841.13Aquaporin NIP4-1 OS=Oryza sativa subsp. japonica G... [more]
NIP71_ARATH7.407e-1840.74Probable aquaporin NIP7-1 OS=Arabidopsis thaliana ... [more]
TIP22_ARATH1.183e-1540.63Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP21_ARATH1.183e-1541.24Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ1.544e-1542.11Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE2.017e-1540.82Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC07009B01SK SaltLeaf1 Citrus clementina cDNA clone C07009B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300349 ID=CX300349; Name=CX300349; organism=Citrus clementina; type=EST; length=622bp
GGAACACTTCGGTTACTGTTTCAAGAAAAACAGGATCAGTTCGCAGGAAC
ACTTCCAGCTGGCTCCAATATTCAGGCGTTTGTGATGGAGTTCATTATCA
CCTTCTACCTCATGTTTGTCATATCCGGTGTCGCCACCGATAACAGAGCT
ATAGGCGAGCTTGCAGGTCTCGCTGTTGGTTCCACAGTGCTGCTTAATGT
CATGTTTGCCGGGCCAATAACAGGAGCATCAATGAACCCAGCAAGAAGCT
TGGGGCCAGCAATTGTATCAAGTCAGTACAAGGGTTTGTGGATATACATT
GTGGCGCCACCTCTTGGGGCAACTGCAGGGGCTTGGGTTTACAACATGGT
GAGATATACTGACAAGCCTTTGCGAGAGATTACAAAGAGTGCCTCTTTCT
TAAAGGGAGCTGGACGTTCTTAATCTCAGATGATTGGATTTGTTCCAATA
GTTAATAATTGATGGCTTCTGATTTGAGATTAGATGCTAATTCTGTGATT
TGTGTAAACTACAAGAGCCAAGAGGAGGACGCTGTTTTTTTTTTCAATGC
AAATCTTAACTATGTGTGAATGGCATGTACTGGACTTCAAAATGAAATGA
ACTATAATATATTAAAAAAAAA
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